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404.html

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       <link rel="icon" href="/lewisresearchgroup/ms-mint-app/assets/images/favicon.png">
-      <meta name="generator" content="mkdocs-1.6.0, mkdocs-material-9.5.30">
+      <meta name="generator" content="mkdocs-1.6.0, mkdocs-material-9.5.26">
 
 
 
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+      <link rel="stylesheet" href="/lewisresearchgroup/ms-mint-app/assets/stylesheets/main.6543a935.min.css">
 
 
 
@@ -451,7 +451,7 @@ <h4>Cookie consent</h4>
     <script id="__config" type="application/json">{"base": "/lewisresearchgroup/ms-mint-app/", "features": [], "search": "/lewisresearchgroup/ms-mint-app/assets/javascripts/workers/search.b8dbb3d2.min.js", "translations": {"clipboard.copied": "Copied to clipboard", "clipboard.copy": "Copy to clipboard", "search.result.more.one": "1 more on this page", "search.result.more.other": "# more on this page", "search.result.none": "No matching documents", "search.result.one": "1 matching document", "search.result.other": "# matching documents", "search.result.placeholder": "Type to start searching", "search.result.term.missing": "Missing", "select.version": "Select version"}}</script>
 
 
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developer-notes/index.html

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       <link rel="icon" href="../assets/images/favicon.png">
-      <meta name="generator" content="mkdocs-1.6.0, mkdocs-material-9.5.30">
+      <meta name="generator" content="mkdocs-1.6.0, mkdocs-material-9.5.26">
 
 
 
         <title>Developer Notes - ms-mint GUI</title>
 
 
 
-      <link rel="stylesheet" href="../assets/stylesheets/main.3cba04c6.min.css">
+      <link rel="stylesheet" href="../assets/stylesheets/main.6543a935.min.css">
 
 
 
@@ -654,7 +654,7 @@ <h4>Cookie consent</h4>
     <script id="__config" type="application/json">{"base": "..", "features": [], "search": "../assets/javascripts/workers/search.b8dbb3d2.min.js", "translations": {"clipboard.copied": "Copied to clipboard", "clipboard.copy": "Copy to clipboard", "search.result.more.one": "1 more on this page", "search.result.more.other": "# more on this page", "search.result.none": "No matching documents", "search.result.one": "1 matching document", "search.result.other": "# matching documents", "search.result.placeholder": "Type to start searching", "search.result.term.missing": "Missing", "select.version": "Select version"}}</script>
 
 
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+      <script src="../assets/javascripts/bundle.ad660dcc.min.js"></script>
 
 
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gallery/index.html

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       <link rel="icon" href="../assets/images/favicon.png">
-      <meta name="generator" content="mkdocs-1.6.0, mkdocs-material-9.5.30">
+      <meta name="generator" content="mkdocs-1.6.0, mkdocs-material-9.5.26">
 
 
 
         <title>Gallery - ms-mint GUI</title>
 
 
 
-      <link rel="stylesheet" href="../assets/stylesheets/main.3cba04c6.min.css">
+      <link rel="stylesheet" href="../assets/stylesheets/main.6543a935.min.css">
 
 
 
@@ -490,7 +490,7 @@ <h4>Cookie consent</h4>
     <script id="__config" type="application/json">{"base": "..", "features": [], "search": "../assets/javascripts/workers/search.b8dbb3d2.min.js", "translations": {"clipboard.copied": "Copied to clipboard", "clipboard.copy": "Copy to clipboard", "search.result.more.one": "1 more on this page", "search.result.more.other": "# more on this page", "search.result.none": "No matching documents", "search.result.one": "1 matching document", "search.result.other": "# matching documents", "search.result.placeholder": "Type to start searching", "search.result.term.missing": "Missing", "select.version": "Select version"}}</script>
 
 
-      <script src="../assets/javascripts/bundle.fe8b6f2b.min.js"></script>
+      <script src="../assets/javascripts/bundle.ad660dcc.min.js"></script>
 
 
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gui/index.html

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       <link rel="icon" href="../assets/images/favicon.png">
-      <meta name="generator" content="mkdocs-1.6.0, mkdocs-material-9.5.30">
+      <meta name="generator" content="mkdocs-1.6.0, mkdocs-material-9.5.26">
 
 
 
         <title>GUI - ms-mint GUI</title>
 
 
 
-      <link rel="stylesheet" href="../assets/stylesheets/main.3cba04c6.min.css">
+      <link rel="stylesheet" href="../assets/stylesheets/main.6543a935.min.css">
 
 
 
@@ -356,13 +356,13 @@
 </li>
 
         <li class="md-nav__item">
-  <a href="#peak-optimization" class="md-nav__link">
+  <a href="#optimization" class="md-nav__link">
     <span class="md-ellipsis">
-      Peak Optimization
+      Optimization
     </span>
   </a>
 
-    <nav class="md-nav" aria-label="Peak Optimization">
+    <nav class="md-nav" aria-label="Optimization">
       <ul class="md-nav__list">
 
           <li class="md-nav__item">
@@ -741,13 +741,13 @@
 </li>
 
         <li class="md-nav__item">
-  <a href="#peak-optimization" class="md-nav__link">
+  <a href="#optimization" class="md-nav__link">
     <span class="md-ellipsis">
-      Peak Optimization
+      Optimization
     </span>
   </a>
 
-    <nav class="md-nav" aria-label="Peak Optimization">
+    <nav class="md-nav" aria-label="Optimization">
       <ul class="md-nav__list">
 
           <li class="md-nav__item">
@@ -1060,7 +1060,7 @@ <h2 id="add-metabolites">Add Metabolites</h2>
 <li>Add selected metabolites to peaklist (without RT estimation)</li>
 </ul>
 <p><img alt="Add metabolites" src="../image/add-metabolites.png" title="Add metabolites" /></p>
-<h2 id="peak-optimization">Peak Optimization</h2>
+<h2 id="optimization">Optimization</h2>
 <ul>
 <li>Optimize retention times for all peaks or individual peaks</li>
 <li>Preview all peakshapes with quality indicator</li>
@@ -1069,7 +1069,7 @@ <h2 id="peak-optimization">Peak Optimization</h2>
 Additionally, aging of the column leads to drifts in RT that have to be accounted for. 
 The tools in the peak optimization tab can be used to quickly review all  peak definitions in 
 the presently loaded peaklist. </p>
-<p><img alt="Peak optimization" src="../image/peak-optimization.png" title="Peak optimization" /></p>
+<p><img alt="Target optimization" src="../image/target-optimization.png" /></p>
 <p>The <code>GENERATE PEAK PREVIEWS</code> generates a preview of all peak definitions and plots the
 coresponding chromatograms for all files. The peaks can be reviewed and modified one by one
 with the interactive tool. <code>FIND CLOSED PEAKS</code> iterates through all peak definitions and
@@ -1348,7 +1348,7 @@ <h4>Cookie consent</h4>
     <script id="__config" type="application/json">{"base": "..", "features": [], "search": "../assets/javascripts/workers/search.b8dbb3d2.min.js", "translations": {"clipboard.copied": "Copied to clipboard", "clipboard.copy": "Copy to clipboard", "search.result.more.one": "1 more on this page", "search.result.more.other": "# more on this page", "search.result.none": "No matching documents", "search.result.one": "1 matching document", "search.result.other": "# matching documents", "search.result.placeholder": "Type to start searching", "search.result.term.missing": "Missing", "select.version": "Select version"}}</script>
 
 
-      <script src="../assets/javascripts/bundle.fe8b6f2b.min.js"></script>
+      <script src="../assets/javascripts/bundle.ad660dcc.min.js"></script>
 
 
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index.html

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       <link rel="icon" href="assets/images/favicon.png">
-      <meta name="generator" content="mkdocs-1.6.0, mkdocs-material-9.5.30">
+      <meta name="generator" content="mkdocs-1.6.0, mkdocs-material-9.5.26">
 
 
 
         <title>ms-mint GUI</title>
 
 
 
-      <link rel="stylesheet" href="assets/stylesheets/main.3cba04c6.min.css">
+      <link rel="stylesheet" href="assets/stylesheets/main.6543a935.min.css">
 
 
 
@@ -666,7 +666,7 @@ <h4>Cookie consent</h4>
     <script id="__config" type="application/json">{"base": ".", "features": [], "search": "assets/javascripts/workers/search.b8dbb3d2.min.js", "translations": {"clipboard.copied": "Copied to clipboard", "clipboard.copy": "Copy to clipboard", "search.result.more.one": "1 more on this page", "search.result.more.other": "# more on this page", "search.result.none": "No matching documents", "search.result.one": "1 matching document", "search.result.other": "# matching documents", "search.result.placeholder": "Type to start searching", "search.result.term.missing": "Missing", "select.version": "Select version"}}</script>
 
 
-      <script src="assets/javascripts/bundle.fe8b6f2b.min.js"></script>
+      <script src="assets/javascripts/bundle.ad660dcc.min.js"></script>
 
 
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install/index.html

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       <link rel="icon" href="../assets/images/favicon.png">
-      <meta name="generator" content="mkdocs-1.6.0, mkdocs-material-9.5.30">
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         <title>Installation - ms-mint GUI</title>
 
 
 
-      <link rel="stylesheet" href="../assets/stylesheets/main.3cba04c6.min.css">
+      <link rel="stylesheet" href="../assets/stylesheets/main.6543a935.min.css">
 
 
 
@@ -524,7 +524,7 @@ <h2 id="installation-with-pip">Installation with <code>pip</code></h2>
 </code></pre>
 <p>Should download and install all necessary dependencies and Mint.
 Start the app via:</p>
-<pre><code>Mint.py
+<pre><code>Mint
 </code></pre>
 <h2 id="docker">Docker</h2>
 <p>MINT is now available on DockerHub in containerized format. A container is a standard unit of software that packages up code and all its dependencies, so the application runs quickly and reliably from one computing environment to another. In contrast to a virtual machine (VM), a Docker container image is a lightweight, standalone, executable package of software that includes everything needed to run an application: code, runtime, system tools, system libraries and settings. This allows to run MINT on any computer that can run Docker.</p>
@@ -553,8 +553,8 @@ <h2 id="installation-from-source">Installation from source</h2>
 </code></pre>
 <h2 id="options">Options</h2>
 <p>After installation <code>Mint</code> can be started by running <code>Mint.py</code>.</p>
-<pre><code class="language-console">Mint.py --help
-usage: Mint.py [-h] [--no-browser] [--version] [--data-dir DATA_DIR] [--debug] [--port PORT] [--serve-path SERVE_PATH]
+<pre><code class="language-console">Mint --help
+usage: Mint [-h] [--no-browser] [--version] [--data-dir DATA_DIR] [--debug] [--port PORT] [--serve-path SERVE_PATH]
 
 MINT frontend.
 
@@ -677,7 +677,7 @@ <h4>Cookie consent</h4>
     <script id="__config" type="application/json">{"base": "..", "features": [], "search": "../assets/javascripts/workers/search.b8dbb3d2.min.js", "translations": {"clipboard.copied": "Copied to clipboard", "clipboard.copy": "Copy to clipboard", "search.result.more.one": "1 more on this page", "search.result.more.other": "# more on this page", "search.result.none": "No matching documents", "search.result.one": "1 matching document", "search.result.other": "# matching documents", "search.result.placeholder": "Type to start searching", "search.result.term.missing": "Missing", "select.version": "Select version"}}</script>
 
 
-      <script src="../assets/javascripts/bundle.fe8b6f2b.min.js"></script>
+      <script src="../assets/javascripts/bundle.ad660dcc.min.js"></script>
 
 
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quickstart/index.html

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       <link rel="icon" href="../assets/images/favicon.png">
-      <meta name="generator" content="mkdocs-1.6.0, mkdocs-material-9.5.30">
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         <title>Quickstart - ms-mint GUI</title>
 
 
 
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+      <link rel="stylesheet" href="../assets/stylesheets/main.6543a935.min.css">
 
 
 
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     <script id="__config" type="application/json">{"base": "..", "features": [], "search": "../assets/javascripts/workers/search.b8dbb3d2.min.js", "translations": {"clipboard.copied": "Copied to clipboard", "clipboard.copy": "Copy to clipboard", "search.result.more.one": "1 more on this page", "search.result.more.other": "# more on this page", "search.result.none": "No matching documents", "search.result.one": "1 matching document", "search.result.other": "# matching documents", "search.result.placeholder": "Type to start searching", "search.result.term.missing": "Missing", "select.version": "Select version"}}</script>
 
 
-      <script src="../assets/javascripts/bundle.fe8b6f2b.min.js"></script>
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targets/index.html

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         <title>Target lists - ms-mint GUI</title>
 
 
 
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     <script id="__config" type="application/json">{"base": "..", "features": [], "search": "../assets/javascripts/workers/search.b8dbb3d2.min.js", "translations": {"clipboard.copied": "Copied to clipboard", "clipboard.copy": "Copy to clipboard", "search.result.more.one": "1 more on this page", "search.result.more.other": "# more on this page", "search.result.none": "No matching documents", "search.result.one": "1 matching document", "search.result.other": "# matching documents", "search.result.placeholder": "Type to start searching", "search.result.term.missing": "Missing", "select.version": "Select version"}}</script>
 
 
-      <script src="../assets/javascripts/bundle.fe8b6f2b.min.js"></script>
+      <script src="../assets/javascripts/bundle.ad660dcc.min.js"></script>
 
 
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