This is supposed to run on ARC. All the default file paths are set to locations on arc.
Depends on lrg-omics package link.
from lsarp import LSARP
lsarp = LSARP()
lsarp.load_shipments()
shipments = lsarp.shipments
| PLATE_SETUP | PLATE_ROW | PLATE_COL | DATE_SHIPPED | PLATE | RPT | ORGANISM | ISOLATE_NBR | BI_NBR | ORGANISM_ORIG | SHIPMENT_FILE | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | EC001 | A | 01 | 2021-11-15 00:00:00 | EC001 | R0 | EC | ATCC_25922 | EC | EC001_20211115_LSARP_Shipment.xlsx | |
| 1 | EC001 | A | 02 | 2021-11-15 00:00:00 | EC001 | R0 | EC | BI_10_0005 | BI_10_0005 | EC | EC001_20211115_LSARP_Shipment.xlsx |
| 2 | EC001 | A | 03 | 2021-11-15 00:00:00 | EC001 | R0 | EC | BI_10_0006 | BI_10_0006 | EC | EC001_20211115_LSARP_Shipment.xlsx |
| 3 | EC001 | A | 04 | 2021-11-15 00:00:00 | EC001 | R0 | EC | BI_10_0007 | BI_10_0007 | EC | EC001_20211115_LSARP_Shipment.xlsx |
| 4 | EC001 | A | 05 | 2021-11-15 00:00:00 | EC001 | R0 | EC | BI_10_0008 | BI_10_0008 | EC | EC001_20211115_LSARP_Shipment.xlsx |
| 5 | EC001 | A | 06 | 2021-11-15 00:00:00 | EC001 | R0 | EC | BI_10_0013 | BI_10_0013 | EC | EC001_20211115_LSARP_Shipment.xlsx |
| 6 | EC001 | A | 07 | 2021-11-15 00:00:00 | EC001 | R0 | EC | BI_10_0014 | BI_10_0014 | EC | EC001_20211115_LSARP_Shipment.xlsx |
| 7 | EC001 | A | 08 | 2021-11-15 00:00:00 | EC001 | R0 | EC | BI_10_0016 | BI_10_0016 | EC | EC001_20211115_LSARP_Shipment.xlsx |
| 8 | EC001 | A | 09 | 2021-11-15 00:00:00 | EC001 | R0 | EC | BI_10_0017 | BI_10_0017 | EC | EC001_20211115_LSARP_Shipment.xlsx |
| 9 | EC001 | A | 10 | 2021-11-15 00:00:00 | EC001 | R0 | EC | BI_10_0020 | BI_10_0020 | EC | EC001_20211115_LSARP_Shipment.xlsx |
from lsarp import AHS
ahs = AHS()
ahs?
Has AHS datasets stored in attributes:
-----
accs - older version of the NACRS database
claims - Practitioner Claims,Physician Claims, Physician Billing
dad - Discharge Abstract Database (DAD), Inpatient
lab - Provinicial Laboratory(Lab)
narcs - National Ambulatory Care Reporting System (NACRS) & Alberta Ambulatory Care Reporting System (AACRS)
pin - Pharmaceutical Information Network(PIN)
reg - Alberta Health Care Insurance Plan (AHCIP) Registry
vs - Vital Statistics-Death