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CCBC Workshop 2016
Gavin Douglas edited this page Sep 29, 2017
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This workshop provides a high-level overview of the major steps in analyzing microbiome data including 16S profiling and shotgun metagenomics. It combines both lectures and tutorials with example datasets that provides suggestions for best practices in the field. This workshop was presented at the GLBIO/CCBC Conference in Toronto on May 16th.
- 10:30-12:30
- ~1 hour 16S lecture by Rob Beiko
- ~1 hour 16S tutorial by Mike Hall
- Lunch Break
- 1:30-3:30
- ~1 hour metagenomics lecture by Morgan Langille
- ~1 hour metagenomics tutorial by Morgan Langille
- Please feel free to post a question on the Microbiome Helper google group if you have any issues.
- General comments or inquires about Microbiome Helper can be sent to morgan.langille@dal.ca.
Useful Links
Main SOPs
Amplicon SOP v2 (virtual box workflow)
Amplicon SOP v2 (qiime2-2022.11)
Amplicon SOP v2 (qiime2-2024.5)
PacBio Amplicon SOP v2 (qiime2-2022.2)
Tutorials
- CBW 2024 Workshops
- CBW-IMPACTT-workshop-tutorials-2023
- Intro to Unix
- ICG workshop tutorials 2023
- IMPACTT workshop tutorials 2022
- PICRUSt2 (CBW 2021)
- Metagenomics (CBW 2021)
- Intro to GNU Parallel
- BIOC4010 16S Tutorial
- Metagenomics Tutorial (Humann2 based)
- Download From SRA
- Random Forest Tutorial in R
- Other Tutorials