Issue 125 help popups

R/app_utils_ui.R

@@ -35,15 +35,42 @@ updateGet_file_ui <- function(inputId, value, ...){
   NULL
 }
 
-check_comment_ui <- function(id, label, com = "", ...){
+guide_popup <- function(id){
+  id <- stringr::str_remove(id, "help_")
+
+  sec <- stringr::str_extract(id, "^[B-D]")
+  q <- stringr::str_extract(id, "\\d")
+  q1 <- stringr::str_extract(id, "[a-h]")
+  q2 <- stringr::str_extract(id, "i+")
+
+  txt <- guideline_lu_tbl %>% filter(section == sec, question == q |is.na(question),
+                              sub_question == q1 | is.na(sub_question),
+                              sub2_question == q2 | is.na(sub2_question)) %>%
+    pull(guide_text) %>% paste(collapse = "\n")
+
+  ttl <- vulnq_code_lu_tbl %>% filter(Code == id) %>% pull(Question)
+
+  showModal(modalDialog(title = ttl, HTML({txt})))
+}
+
+
+check_comment_ui <- function(id, label, com = "", guide = TRUE, ...){
+  if(guide){
+    chkbxIn <- fluidRow(
+      column(9, checkboxGroupInput(id, label, inline = TRUE, ...)),
+      column(1, actionButton(paste0("help_", id), label = "", icon = icon("info")))
+    )
+  } else {
+    chkbxIn <- checkboxGroupInput(id, label, inline = TRUE, ...)
+  }
+
   div(id = paste0(id, "div"),
-      checkboxGroupInput(id, label, inline = TRUE, ...),
+      chkbxIn,
       #decrease whitespace b/w elements
       div(style = "margin-top: -1.5em"),
       textAreaInput(paste0("com", id), label = NULL, placeholder = "Comments",
                     value = com)
   )
-
 }
 
 updateCheck_comment_ui <- function(inputId, value, com, session){

R/ccvi_app.R

@@ -282,7 +282,6 @@ ccvi_app <- function(testmode_in, ...){
                 h4("Section B: Indirect Exposure to Climate Change"),
                 h4("Evaluate for specific geographical area under consideration"),
                 h5("Factors that influence vulnerability"),
-                actionButton("guideB", "Show guidelines"),
                 check_comment_ui("B1", "1) Exposure to sea level rise:",
                                  choiceNames = valueNms,
                                  choiceValues = valueOpts),
@@ -306,7 +305,6 @@ ccvi_app <- function(testmode_in, ...){
               div(
                 id = "secC",
                 h4("Section C: Sensitivity and Adaptive Capacity"),
-                actionButton("guideC", "Show guidelines"),
                 check_comment_ui("C1", "1) Dispersal and movements",
                                  choiceNames = valueNms,
                                  choiceValues = valueOpts),
@@ -395,7 +393,6 @@ ccvi_app <- function(testmode_in, ...){
                 id = "secD",
                 h4("Section D: Documented or Modeled Response to Climate Change"),
                 h5("(Optional; May apply across the range of a species)"),
-                actionButton("guideD", "Show guidelines"),
 
                 check_comment_ui("D1", "1) Documented response to recent climate change. ",
                                  choiceNames = valueNms,
@@ -418,7 +415,6 @@ ccvi_app <- function(testmode_in, ...){
               12,
               h3("Spatial Vulnerability Questions"),
               h4("Section C: Sensitivity and Adaptive Capacity"),
-              actionButton("guideC2", "Show guidelines"),
               br(),
               spat_vuln_ui(
                 id = "C2ai",
@@ -434,16 +430,17 @@ ccvi_app <- function(testmode_in, ...){
                 vuln_q_nm = "2b) i) Historical hydrological niche."
               ),
               h4("Section D: Documented or Modeled Response to Climate Change"),
-              actionButton("guideD2", "Show guidelines"),
               br(),
               spat_vuln_ui(
                 id = "D2_3",
                 header = "Modeled future range change",
                 chk_box = FALSE
               ),
-              strong("2) Modeled future (2050) change in population or range size."),
+              fluidRow(column(9, strong("2) Modeled future (2050) change in population or range size.")),
+                       column(1, actionButton(paste0("help_", "D2"), label = "", icon = icon("info")))),
               uiOutput("box_D2"),
-              strong("3) Overlap of modeled future (2050) range with current range"),
+              fluidRow(column(9, strong("3) Overlap of modeled future (2050) range with current range"),),
+                       column(1, actionButton(paste0("help_", "D3"), label = "", icon = icon("info")))),
               uiOutput("box_D3"),
               actionButton("next5", "Next", class = "btn-primary")
             )
@@ -1080,16 +1077,13 @@ ccvi_app <- function(testmode_in, ...){
 
     # Vulnerability Qs #===============
     # Show guidelines with additional info for each section
-    observeEvent(input$guideB, {
-      guideB()
-    })
-
-    observeEvent(input$guideC, {
-      guideCNonSpatial()
-    })
+    observe({
+      help_ins <- stringr::str_subset(names(input), "help")
 
-    observeEvent(input$guideD, {
-      guideDNonSpatial()
+      purrr::map(help_ins,
+                 ~observeEvent(input[[.x]], {
+                   guide_popup(.x)
+                 }, ignoreInit = TRUE))
     })
 
     # When next button is clicked move to next panel
@@ -1100,13 +1094,6 @@ ccvi_app <- function(testmode_in, ...){
     })
 
     # Spatial Vulnerability Questions #========================
-    observeEvent(input$guideC2, {
-      guideCSpatial()
-    })
-
-    observeEvent(input$guideD2, {
-      guideDSpatial()
-    })
 
     # C2ai
     observe({spat_vuln_hide("C2ai", clim_vars()$htn, doSpatial(), restored_df(), spat_res()$HTN_1)})
@@ -1256,7 +1243,8 @@ ccvi_app <- function(testmode_in, ...){
                          choiceNames = valueNms,
                          choiceValues = valueOpts,
                          selected = box_val,
-                         com = prevCom)
+                         com = prevCom,
+                         guide = FALSE)
       }
 
     })
@@ -1283,7 +1271,8 @@ ccvi_app <- function(testmode_in, ...){
                          choiceNames = valueNms,
                          choiceValues = valueOpts,
                          selected = box_val,
-                         com = prevCom)
+                         com = prevCom,
+                         guide = FALSE)
       }
 
     })

R/guidelines.R

@@ -1651,7 +1651,7 @@ guideExposure <- function(){
     The Index treats exposure to climate change as a modifier of sensitivity and
     adaptive capacity. If the climate in a given assessment area will not change
     much, none of the sensitivity/adaptive capacity factors will weigh heavily,
-    and a species is likely to score at the Not Vulnerable end of the range.
+    and a species is likely to score at the Less Vulnerable end of the range.
     A large change in temperature or moisture availability will amplify the effect
     of any related sensitivity/adaptive capacity factor, and will contribute
     to a score reflecting higher vulnerability to climate change. In most cases,

data-raw/Code_Q_lookup.csv

@@ -0,0 +1,28 @@
+Code,Question,Max_Value,is_spatial
+B1,  1) Exposure to sea level rise ,3,0
+B2a,    a) Natural barriers,3,0
+B2b,    b) Anthropogenic barriers,3,0
+B3,  3) Predicted impact of land use changes resulting from human responses to climate change,2,0
+C1,  1) Dispersal and movements ,3,0
+C2ai,i) historical thermal niche,3,1
+C2aii,ii) physiological thermal niche,3,1
+C2bi,i) historical hydrological niche,3,1
+C2bii,ii) physiological hydrological niche,3,0
+C2c,    c) Dependence on a specific disturbance regime likely to be impacted by climate change,2,0
+C2d,"    d) Dependence on ice, ice-edge, or snow-cover habitats",3,0
+C3,  3) Restriction to uncommon landscape/geological features or derivatives,2,0
+C4a,    a) Dependence on other species to generate required habitat,2,0
+C4b,    b) Dietary versatility (animals only),2,0
+C4c,    c) Pollinator versatility (plants only),2,0
+C4d,    d) Dependence on other species for propagule dispersal,2,0
+C4e,    e) Sensitivity to pathogens or natural enemies,2,0
+C4f,    f) Sensitivity to competition from native or non-native species,2,0
+C4g,    g) Forms part of an interspecific interaction not covered by 5a-f,2,0
+C5a,    a) Measured genetic variation ,2,0
+C5b,"    b) Occurrence of bottlenecks in recent evolutionary history (use only if 5a is ""unknown"")",2,0
+C5c,    c) Reproductive system (plants only; use only if C5a and C5b are "unknown") ,2,0
+C6,  6) Phenological response to changing seasonal temperature and precipitation dynamics,2,0
+D1,  1) Documented response to recent climate change ,3,0
+D2,  2) Modeled future (2050) change in population or range size ,3,1
+D3,  3) Overlap of modeled future (2050) range with current range,3,1
+D4,  4) Occurrence of protected areas in modeled future (2050) distribution,2,0