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Feature/sunmpicomm#370

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gardner48 merged 196 commits intodevelopLLNL/sundials:developfrom feature/sunmpicommLLNL/sundials:feature/sunmpicommCopy head branch name to clipboardNov 28, 2023

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Commits

Commits on Oct 26, 2023

• remove deprecated arkode code

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• remove direct and spils header files

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• remove kinsol deprecated code

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• more changes for the removal of spils and direct

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• remove more deprecated code

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• realtype --> sunrealtype

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• update sunrealtype related macros

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• add old types into a different header for backwards compatibility

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• booleantype --> sunbooleantype

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• changelog note

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• fix redefinition

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• regen swig

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• update swig

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Commits on Oct 27, 2023

• Merge branch 'develop' into feature/remove-deprecated-code

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• Apply suggestions from code review

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Commits on Nov 2, 2023

• Feature: Fortran interface for lapack dense solver (#353)

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• Feature/new tables (#359)

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• remove implementation of SUNLinsSol and SUNNonlinSol printinfo functions

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• replace use of SetDiagnostics in some arkode examples

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• make INFO level the default for logging

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• change arkode INFO logging to DEBUG

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• add debugging filename

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Commits on Nov 3, 2023

• clean up use of removed functions

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• Merge remote-tracking branch 'origin/develop' into feature/remove-deprecated-code

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• Merge branch 'feature/remove-deprecated-code' into feature/remove-deprecated-code-types

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Commits on Nov 5, 2023

• remove deprecated arkode code

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• remove direct and spils header files

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• remove kinsol deprecated code

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• more changes for the removal of spils and direct

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• remove more deprecated code

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• update swig

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• Apply suggestions from code review

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• Feature: Fortran interface for lapack dense solver (#353)

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• remove implementation of SUNLinsSol and SUNNonlinSol printinfo functions

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• replace use of SetDiagnostics in some arkode examples

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• make INFO level the default for logging

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• change arkode INFO logging to DEBUG

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• add debugging filename

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• clean up use of removed functions

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• clean removed functions in benchmarks

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• remove _spils and _direct references

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• remove cpodes script

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• cleanup use of removed PREC_ macro

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• remove unused flag

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• Merge branch 'feature/remove-deprecated-code' into feature/remove-deprecated-code-types

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• regen fortran

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• clean up more use of Diagnostics

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• Merge branch 'feature/remove-deprecated-code' into feature/remove-deprecated-code-types

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Commits on Nov 6, 2023

• remove sundials_lapack.h from install list

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• Merge branch 'feature/remove-deprecated-code' into feature/remove-deprecated-code-types

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• use SUN_RCONST

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• remove KINSetInfofile

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• Merge branch 'develop' into feature/remove-deprecated-code

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• remove warnings to stdout

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Commits on Nov 7, 2023

• Merge remote-tracking branch 'origin/develop' into feature/remove-deprecated-code

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• Merge branch 'feature/remove-deprecated-code' into feature/remove-deprecated-code-types

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• update action to sunrealtype

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• rename sundials_generic to sundials_core

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• always link to sundials_core rather than include its objects

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• update N_VGetCommunicator to use SUN_Comm

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• update GetCommunicator docs

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• update swig

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• use SUN_Comm in profiler and logger

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• rename sundials_fgeneric to sundials_fcore

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• fix comm use with logger in fortran

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• update signatures in docs and recent changes

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• fix typo

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• update types section to be in the "Using SUNDIALS" section

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• remove DFID

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• remove KINInfoHandler

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Commits on Nov 8, 2023

• Merge remote-tracking branch 'origin/develop' into feature/remove-deprecated-code

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• remove unused variable

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Commits on Nov 9, 2023

• Merge branch 'develop' into feature/remove-deprecated-code

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• remove unused variables

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• Update examples/arkode/CXX_xbraid/ark_heat2D_hypre_pfmg_xbraid.cpp

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• doc fixes

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• address more small comments

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Commits on Nov 10, 2023

• fix translation of commptr to comm

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• SUN_Comm to SUNComm for consistency with other types

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• update vectors I missed before

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• Fixed broken builds due to incorrect usage of SUNLogger_Create

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• change SUNContext_Create to accept SUN_Comm

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• find and replace SUNContext_Create with NULL to use SUN_COMM_NULL

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• find and replace passing of comm pointer to SUNContext_Create with passing of comm by value

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• SUN_Comm to SUNComm for consistency with other types

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• post merge fix

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• change comm NULL check

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• Fix fortran interface to MPI_Comm, address calls to MPI functions before MPI_Init, and fix docs

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• fix C++ interface to SUNContext

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• fix a call to SUNProfiler_Create

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• fix typo

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• remove delted functions from soruce

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• remove unused kinsol parts

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• remove use of printfl

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• change default logging level

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• remove more unused stuff in arkode

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• fix some C++ calls to SUNContext_Create

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• remove uses of ark_mem->report

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• build with different logging levels and profiling on/off

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• remove broken line

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• rename GitHub actions CI jobs

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• update log levels cycles through

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• dont automatically include sundials_context.hpp

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• add recent changes

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• fix indentation

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• undo removal of include

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• dont fail fast

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Commits on Nov 11, 2023

• fix logging statements in arkode_adapt broken in merge

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• fix compiler warning

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• Merge branch 'feature/remove-deprecated-code' into feature/remove-deprecated-code-types

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• post merge fixes

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• post-merge fix: change RCONST to SUN_RCONST

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• another spot where we need to supress warning of set but unused

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• Merge branch 'feature/remove-deprecated-code' into feature/remove-deprecated-code-types

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• Merge branch 'feature/remove-deprecated-code-types' into feature/sunmpicomm

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• regen fortran

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• Update doc/shared/nvectors/NVector_Description.rst

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Commits on Nov 12, 2023

• Merge remote-tracking branch 'origin/develop' into feature/remove-deprecated-code

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• Merge branch 'feature/remove-deprecated-code' into feature/remove-deprecated-code-types

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• Merge branch 'feature/remove-deprecated-code-types' into feature/sunmpicomm

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• fix some more SUNContext_Create calls

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• remove left over debugging print statements

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Commits on Nov 13, 2023

• use SUN_COMM_NULL

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• doc grammar

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• doc fix

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• need to use types mode for SUN_COMM_NULL

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• fix MPI linking for sunadaptcontroller

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• Merge remote-tracking branch 'origin/develop' into feature/remove-deprecated-code-types

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• Merge branch 'feature/remove-deprecated-code-types' into feature/sunmpicomm

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• a bad solution to SUN_COMM_NULL fortran mapping

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Commits on Nov 14, 2023

• remove unused variable

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• possible workaround for MPI in installed examples

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• fix references to sundials_core_obj

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• add details about linking libsundials_core in docs

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• link to core in templates

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• fix doc build

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• Update CHANGELOG.md

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• update recent changes

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• fix tables

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• fix typo

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• install sundials_types_deprecated.h

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• Update doc/shared/sunmatrix/SUNMatrix_SLUNRloc.rst

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• Merge remote-tracking branch 'origin/feature/remove-deprecated-code-types' into feature/sunmpicomm

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• add mpi to SUNDIALSConfig

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• Merge remote-tracking branch 'origin/develop' into feature/sunmpicomm

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• add core lib to xbraid cmake template

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• fix install doc includes

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• fix IDAS doc build

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• fix Ginkgo matrix include in KINSOL docs

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Commits on Nov 15, 2023

• replace NULL with SUN_COMM_NULL

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• link cvode fused ops to core

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• link sunmemory to core

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• use MPI_Comm where we can

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• add sundials_core to makefile templates

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Commits on Nov 16, 2023

• Merge branch 'develop' into feature/sunmpicomm

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Commits on Nov 20, 2023

• fix cmake templates

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• move core lib to later in link list

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Commits on Nov 21, 2023

• add mpi paths to config

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• try MPIEXEC_EXECUTABLE

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• need core lib in second loop

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• link header defined libraries to core

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• remove unused variable

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• update docs with info on sundials_core

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Commits on Nov 23, 2023

• Update doc/shared/sundials/Install.rst

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Commits on Nov 27, 2023

• update changelog according to PR comments

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• use MPI_C_COMPILER instead of MPIEXEC_EXECUTABLE for finding MPI in SUNDIALSConfig

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• cmake fixes as per commentd

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• more doc fixes based on comments

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• move cmake code for setting _EXAMPLES_lang_COMPILER variables to examples CMakeLists.txt

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• quote MPI variables in example templates

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• dont link to sundials_core in kokkos example

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• fix formatting in f90 examples

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• add quotes to @_EXAMPLES_CXX_COMPILER@

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• move sundials_core in makefile templates

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• formatting

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• make sundials_fcore_mod library and use it instead of object lib

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• Fix c2f fortran case

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• fixes in logger and profiler related to freeing comm

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• remove duplicate swig code

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• recent change fixes

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• insert copyright into sundials_types_mod

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• make suggested change in manyvector

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• use cmake 3.18.6 for testing

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• fix f2003 example templates

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Commits on Nov 28, 2023

• Update CHANGELOG.md

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• return success instead of an error when pointer is null in destroy functions

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• update docs as requested

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• more doc fixes

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• Merge remote-tracking branch 'origin/feature/sunmpicomm' into feature/sunmpicomm

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