RNA2D-data-schema

RNA2D-data-schema defines a standard JSON Schema to facilitate export of RNA secondary structures (2D) in specific layouts.

For example, work is underway to use the schema to export RNA 2D structures from R2DT as JSON files that can be imported into another software for manual editing.

⚠️ This is work in progress and the schema is subject to change.

Features

The following information can currently be stored:

• nucleotide sequence
• (x, y) coordinates of each nucleotides
• RNA base pairs with the support of Westhof-Leontis schema
• labels and classes can be optionally attached to each nucleotide

A script can be used to validate a JSON file and ensure that the data is formatted correctly.

Get involved

We invite anyone interested in using the schema in your work to get involved by creating an issue.