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Update OS to Ubuntu 24.04 and ROOT to 6.32.04 #103

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Update OS to Ubuntu 24.04 and ROOT to 6.32.04 #103

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221 changes: 9 additions & 212 deletions Dockerfile
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Original file line number Diff line number Diff line change
@@ -1,7 +1,6 @@

FROM ubuntu:22.04
LABEL ubuntu.version="22.04"
MAINTAINER Tom Eichlersmith <eichl008@umn.edu>
FROM rootproject/root:6.32.04-ubuntu24.04
LABEL maintainer="Tom Eichlersmith <eichl008@umn.edu>, Tamas Almos Vami <Tamas.Almos.Vami@cern.ch>"

ARG NPROC=1

Expand Down Expand Up @@ -50,7 +49,10 @@ RUN install-ubuntu-packages \
sudo \
time \
util-linux \
zsh
zsh \
libx11-dev \
libxmu-dev \
&& rm -rf /var/lib/apt/lists/*

# Basic python support, necessary for the build steps.
#
Expand All @@ -68,10 +70,10 @@ RUN install-ubuntu-packages \
#
# Adapted from acts-project/machines
###############################################################################
ENV __wget wget -q -O -
ENV __wget="wget -q -O -"
ENV __untar_to="tar -xz --strip-components=1 --directory"
ENV __untar="${__untar_to} src"
ENV __prefix /usr/local
ENV __prefix="/usr/local"

# this directory is where folks should "install" code compiled with the container
# i.e. folks should mount a local install directory to /externals so that the
Expand All @@ -96,136 +98,8 @@ RUN mkdir src &&\
cmake --build src/build --target install -j$NPROC &&\
rm -rf src

###############################################################################
# PYTHIA6
#
# Needed for GENIE. Needs to be linked with ROOT.
#
# Looks complicated? Tell me about it.
# Core of what's done follows from here:
# https://root-forum.cern.ch/t/root-with-pythia6-and-pythia8/19211
# (1) Download pythia6 build tarball from ROOT. Known to lead to a build that can work with ROOT.
# (2) Download the latest Pythia6 (6.4.2.8) from Pythia. Yes, it's still ancient.
# (3) Declare extern some definitions that need to be extern via sed.
# Compiler/linker warns. Hard-won solution.
# (4) Build with C and FORTRAN the various pieces.
# (5) Put everything in a directory in the install area, and cleanup.
#
# (Ideally GENIE works with Pythia8? But not sure that works yet despite the adverts that it does.)
#
###############################################################################
ENV PYTHIA_VERSION="6.428"
ENV PREVIOUS_PYTHIA_VERSION="6.416"
ENV PYTHIA_MAJOR_VERSION=6
LABEL pythia.version=${PYTHIA_VERSION}
#"6.428"
# Pythia uses an un-dotted version file naming convention. To deal with that
# we need some string manipulation and exports that work best with bash
SHELL ["/bin/bash", "-c"]
#ENV PYTHIA_MAJOR_VERSION=$(awk '{print int($1) }' <<< ${PYTHIA_VERSION} )
# export PYTHIA_MAJOR_VERSION=$(awk '{print int($1) }' <<< ${PYTHIA_VERSION} ) &&\

RUN mkdir src && \
export PYTHIA_VERSION_INTEGER=$(awk '{print $1*1000}' <<< ${PYTHIA_VERSION} ) &&\
export PREVIOUS_PYTHIA_VERSION_INTEGER=$(awk '{print $1*1000}' <<< ${PREVIOUS_PYTHIA_VERSION} ) &&\
${__wget} https://root.cern.ch/download/pythia${PYTHIA_MAJOR_VERSION}.tar.gz | ${__untar} &&\
wget --no-check-certificate https://pythia.org/download/pythia${PYTHIA_MAJOR_VERSION}/pythia${PYTHIA_VERSION_INTEGER}.f &&\
mv pythia${PYTHIA_VERSION_INTEGER}.f src/pythia${PYTHIA_VERSION_INTEGER}.f && rm -rf src/pythia${PREVIOUS_PYTHIA_VERSION_INTEGER}.f &&\
cd src/ &&\
sed -i 's/int py/extern int py/g' pythia${PYTHIA_MAJOR_VERSION}_common_address.c && \
sed -i 's/extern int pyuppr/int pyuppr/g' pythia${PYTHIA_MAJOR_VERSION}_common_address.c && \
sed -i 's/char py/extern char py/g' pythia${PYTHIA_MAJOR_VERSION}_common_address.c && \
echo 'void MAIN__() {}' >main.c && \
gcc -c -fPIC -shared main.c -lgfortran && \
gcc -c -fPIC -shared pythia${PYTHIA_MAJOR_VERSION}_common_address.c -lgfortran && \
gfortran -c -fPIC -shared pythia*.f && \
gfortran -c -fPIC -shared -fno-second-underscore tpythia${PYTHIA_MAJOR_VERSION}_called_from_cc.F && \
gfortran -shared -Wl,-soname,libPythia${PYTHIA_MAJOR_VERSION}.so -o libPythia${PYTHIA_MAJOR_VERSION}.so main.o pythia*.o tpythia*.o &&\
mkdir -p ${__prefix}/pythia${PYTHIA_MAJOR_VERSION} && cp -r * ${__prefix}/pythia${PYTHIA_MAJOR_VERSION}/ &&\
cd ../ && rm -rf src &&\
echo "${__prefix}/pythia${PYTHIA_MAJOR_VERSION}/" > /etc/ld.so.conf.d/pythia${PYTHIA_MAJOR_VERSION}.conf

SHELL ["/bin/sh", "-c"]
###############################################################################
# CERN's ROOT
# Needed for GENIE and serialization within the Framework
#
# We have a very specific configuration of the ROOT build system
# - Use C++17 so that ROOT doesn't re-define C++17 STL classes in its headers
# We want to use C++17 in Framework and ROOT's redefinitions prevent that.
# - Use gnuinstall=ON and CMAKE_INSTALL_LIBDIR=lib to make ROOT be a system install
# - Start with a minimal build (gminimal) and then enable things from there.
# - Need asimage and opengl built for the ROOT GUIs to be functional.
# - Want pyroot to support some PyROOT-based analyses
# - Turn off xrootd since its build fails for some reason (and we don't need it)
# - gsl_shared, mathmore, and pytia6 are all used by GENIE
#
# After building and installing, we write a ld conf file to include ROOT's
# libraries in the linker cache, then rebuild the linker cache so that
# downstream libraries in this Dockerfile can link to ROOT easily.
#
# We promote the environment variables defined in thisroot.sh to this
# Dockerfile so that thisroot.sh doesn't need to be sourced.
###############################################################################

RUN install-ubuntu-packages \
fonts-freefont-ttf \
libafterimage-dev \
libfftw3-dev \
libfreetype6-dev \
libftgl-dev \
libgif-dev \
libgl1-mesa-dev \
libgl2ps-dev \
libglew-dev \
libglu-dev \
libjpeg-dev \
liblz4-dev \
liblzma-dev \
libpcre++-dev \
libpng-dev \
libx11-dev \
libxext-dev \
libxft-dev \
libxml2-dev \
libxmu-dev \
libxpm-dev \
libz-dev \
libzstd-dev \
srm-ifce-dev \
libgsl-dev # Necessary for GENIE

ENV ROOT_VERSION="6.22.08"
LABEL root.version=${ROOT_VERSION}
RUN mkdir src &&\
${__wget} https://root.cern/download/root_v${ROOT_VERSION}.source.tar.gz |\
${__untar} &&\
cmake \
-DCMAKE_BUILD_TYPE=Release \
-DCMAKE_CXX_STANDARD=17 \
-DCMAKE_INSTALL_PREFIX=${__prefix} \
-DCMAKE_INSTALL_LIBDIR=lib \
-Dgnuinstall=ON \
-Dgminimal=ON \
-Dasimage=ON \
-Dgdml=ON \
-Dopengl=ON \
-Dpyroot=ON \
-Dxrootd=OFF \
-Dgsl_shared=ON \
-Dmathmore=ON \
-Dpythia6=ON \
-DPYTHIA6_LIBRARY=${__prefix}/pythia6/libPythia6.so \
-B build \
-S src \
&& cmake --build build --target install -j$NPROC &&\
rm -rf build src &&\
ldconfig
ENV ROOTSYS=${__prefix}
ENV PYTHONPATH=${ROOTSYS}/lib:${PYTHONPATH}
ENV JUPYTER_PATH=${ROOTSYS}/etc/notebook:${JUPYTER_PATH}
ENV JUPYTER_CONFIG_DIR=${ROOTSYS}/etc/notebook:${JUPYTER_CONFIG_DIR}
ENV CLING_STANDARD_PCH=none

###############################################################################
# Geant4
Expand Down Expand Up @@ -294,83 +168,6 @@ RUN mkdir src &&\
&&\
rm -rf src

###############################################################################
# LHAPDF
#
# Needed for GENIE
#
# - We disable the python subpackage because it is based on Python2 whose
# executable has been removed from Ubuntu 22.04.
###############################################################################
ENV LHAPDF_VERSION="6.5.3"
LABEL lhapdf.version=${LHAPDF_VERSION}
RUN mkdir src &&\
${__wget} https://lhapdf.hepforge.org/downloads/?f=LHAPDF-${LHAPDF_VERSION}.tar.gz |\
${__untar} &&\
cd src &&\
./configure --disable-python --prefix=${__prefix} &&\
make -j$NPROC install &&\
cd ../ &&\
rm -rf src

###############################################################################
# GENIE
#
# Needed for ... GENIE :)
#
# - GENIE looks in ${ROOTSYS}/lib for various ROOT libraries it depends on.
# This is annoying because root installs its libs to ${ROOTSYS}/lib/root
# when the gnuinstall parameter is ON. We fixed this by forcing ROOT to
# install its libs to ${ROOTSYS}/lib even with gnuinstall ON.
# - liblog4cpp5-dev from the Ubuntu 22.04 repos seems to be functional
# - GENIE's binaries link to pythia6 at runtime so we need to add the pythia6
# library directory into the linker cache
# - GENIE reads its configuration from files written into its source tree
# (and not installed), so we need to keep its source tree around
#
# Some errors from the build configuration
# - The 'quota: not found' error can be ignored. It is just saving a snapshot
# of the build environment.
# - The 'cant exec git' error is resolved within the perl script which
# deduces the version from the files in the .git directory if git is
# not installed.
###############################################################################

# See https://github.com/LDMX-Software/docker/pull/48
#
# Note that libgsl-dev needs to be available already when building ROOT to build
# GENIE
RUN install-ubuntu-packages \
liblog4cpp5-dev \
libtool


ENV GENIE_VERSION=3.02.00
#ENV GENIE_REWEIGHT_VERSION=1_02_00
ENV GENIE=/usr/local/src/GENIE/Generator
#ENV GENIE_DOT_VERSION="$(sed 's,_,\.,g' <<< $GENIE_VERSION )"
LABEL genie.version=${GENIE_VERSION}

SHELL ["/bin/bash", "-c"]

RUN mkdir -p ${GENIE} &&\
export ENV GENIE_GET_VERSION="$(sed 's,\.,_,g' <<< $GENIE_VERSION )" &&\
${__wget} https://github.com/GENIE-MC/Generator/archive/refs/tags/R-${GENIE_GET_VERSION}.tar.gz |\
${__untar_to} ${GENIE} &&\
cd ${GENIE} &&\
./configure \
--enable-lhapdf6 \
--disable-lhapdf5 \
--enable-gfortran \
--with-gfortran-lib=/usr/x86_64-linux-gnu/ \
--disable-pythia8 \
--with-pythia6-lib=${__prefix}/pythia6 \
--enable-test \
&& \
make -j$NPROC && \
make -j$NPROC install

SHELL ["/bin/sh", "-c"]

###############################################################################
# Catch2
Expand Down Expand Up @@ -444,7 +241,7 @@ RUN ldconfig -v
# Extra python packages for analysis
###############################################################################
COPY ./python_packages.txt /etc/python_packages.txt
RUN python3 -m pip install --no-cache-dir --requirement /etc/python_packages.txt
RUN python3 -m pip install --no-cache-dir --break-system-packages --requirement /etc/python_packages.txt

# Dependencies for LDMX-sw and/or the container environment
RUN install-ubuntu-packages \
Expand Down
56 changes: 28 additions & 28 deletions python_packages.txt
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Original file line number Diff line number Diff line change
@@ -1,28 +1,28 @@
contourpy==1.0.6
cycler==0.11.0
Cython==0.29.32
fonttools==4.38.0
joblib==1.2.0
kiwisolver==1.4.4
llvmlite==0.39.1
matplotlib==3.6.2
mplhep==0.3.26
mplhep-data==0.0.3
numba==0.56.4
numpy==1.21.5
packaging==21.3
pandas==1.5.2
Pillow==9.3.0
pip==22.0.2
pyparsing==3.0.9
python-dateutil==2.8.2
pytz==2022.6
scikit-learn==1.1.3
scipy==1.9.3
setuptools==59.6.0
six==1.16.0
threadpoolctl==3.1.0
uhi==0.3.2
uproot==4.3.7
wheel==0.37.1
xgboost==1.7.1
contourpy
cycler
Cython
fonttools
joblib
kiwisolver
llvmlite
matplotlib
mplhep
mplhep-data
numba
numpy
packaging
pandas
Pillow
pip
pyparsing
python-dateutil
pytz
scikit-learn
scipy
setuptools
six
threadpoolctl
uhi
uproot
wheel
xgboost
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