Analysing genome skimming data

This section is presenting you a suite of methods developed for work with genome skimming datasets.

The theory for the five tutorials is split in two lectures. The ⚒ Phylogenetic placement of samples (Skmer) and ⚒ Estimating genomic distance (APPLES) are covered in the first lecture (and corresponding slides). The ⚒ Double phylogenetic placement of mixed samples, ⚒ Genome size estimation of skimming data, and ⚒ Contamination in skimming data are covered in the second lecture (corresponding slides).

Here are the instructions for 🖥️Installation of tools to work with skimming data.