Update RNAfeatures.R

KJeynesCupper · Feb 20, 2024 · 043d0b3 · 043d0b3
1 parent 60a04be
commit 043d0b3
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/R/RNAfeatures.R b/R/RNAfeatures.R
@@ -82,8 +82,8 @@ RNAfeatures <- function(data, annotation,
                 type=="transposable_element_gene")
     } else {
       anno_repeats <- rtracklayer::import(anno_repeats)
-      repeats <-subset(anno_repeats, type=="transposable_element",
-                  type=="transposable_element_gene")
+      #repeats <-subset(anno_repeats, type=="transposable_element",
+                  #type=="transposable_element_gene")
     }
   genes<-subset(annotation_info[!IRanges::overlapsAny(annotation_info,
                                                             repeats,