initial commit

.gitignore

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+/.quarto/
+.DS_Store
+
+# History files
+.Rhistory
+.Rapp.history
+
+# Session Data files
+.RData
+.Ruserdata
+
+# RStudio files
+.Rproj.user/
+
+# knitr and R markdown default cache directories
+*_cache
+cache/
+
+# Temporary files created by R markdown
+*.utf8.md
+*.knit.md
+
+TODO
+OLD
+checks/
+data/
+extra/
+deskstatshfdb4/

404.qmd

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+---
+title: "404"
+---
+
+Page not found, sorry! Try the search or navigate back to the base website.

README.md

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+# Code for creating website with info on construction of SHFDB4
+
+## Language 
+
+English. 
+
+## Website
+
+https://kiheartfailure.github.io/shfdb4

_freeze/docs/variabledescription/index/execute-results/html.json

@@ -0,0 +1,14 @@
+{
+  "hash": "0522c89ef04fa595b48c7cacbf40424a",
+  "result": {
+    "markdown": "---\nlayout: page\ntitle: Variable description\nexecute:\n  freeze: true  # never re-render during project render\nengine: knitr \nresources:\n  - \"meta_variables.xlsx\"\nvardesc:\n  xlsx: \"meta_variables.xlsx\"\n---\n\n::: {.cell}\n<style type=\"text/css\">\n.embed-container {\n    position: relative;\n    padding-bottom: 129%;\n    height: 0;\n    overflow: hidden;\n    max-width: 100%;\n}\n.embed-container iframe,\n.embed-container object,\n.embed-container embed {\n    position: absolute;\n    top: 0;\n    left: 0;\n    width: 100%;\n    height: 100%;\n}\n</style>\n:::\n\n```{=html}\n<p class=\"text-center\">\n  <a class=\"btn btn-primary btn-lg cv-download\" href=\"\" target=\"_blank\">\n    <i class=\"fa-solid fa-file-arrow-down\"></i>&ensp;Download current CV\n  </a>\n</p>\n<div class=\"embed-container\">\n  <iframe src=\"#toolbar=0\" style=\"border: 0.5px;width: 100%;\"></iframe>\n</div>\n```\n\n```{=html}\n<div  style=\"margin: 30px; text-align: center;\">\n<a class=\"btn btn-primary\" href=\"https://www.marvinschmitt.com/blog/website-tutorial-quarto/\" role=\"button\" target=\"_blank\" style=\"padding: 15px 30px;\">View the tutorial for this template (+ download link)</a>\n</div>\n```\n",
+    "supporting": [],
+    "filters": [
+      "rmarkdown/pagebreak.lua"
+    ],
+    "includes": {},
+    "engineDependencies": {},
+    "preserve": {},
+    "postProcess": true
+  }
+}

_freeze/population/index/execute-results/html.json

@@ -0,0 +1,14 @@
+{
+  "hash": "db1d53d81fc38715f98bb764e904cc30",
+  "result": {
+    "markdown": "---\ntitle: Population\n---\n\n\n\n::: {.cell}\n\n:::\n\n\n## Patients registered in SwedeHF\n\nAll patients recorded in SwedeHF are included. \n\n----\n\n## Patients with HF from the National Patient Register\n\nPatients with an ICD-10 code for HF in main position in the National Patient Register (ICD-10: I110, I130, I132, I255, I420, I423, 1425-9, I43, I50, J81, K761) starting from 2000-01-01 with no previous ICD-9/10 code for HF (I110 I130 I132 I255 I420 I423 1425 I426 I427 I428 I429 I43 I50 J81 K761 ICD-9: 414W 425E 425F 425G 425H 425W 425X 428) since 1987.\n\n----\n\n## HF-free controls\n\nFor each post in SwedeHF or the first date in the National Patient Register a set of controls was chosen by Statistics Sweden in a ratio of 2:1. Since a person can have more than one registered post in SwedeHF a patient can have more than 2 controls in total, up to 2 for each posts.\n\nEligible controls were persons without re-used Swedish personal identity numbers (PINs) and free of HF, defined either in the National Patient registry (ICD-10: I110, I130, I132, I255, I420, I423, 1425-9, I43, I50, J81, K761, R570, ICD-9: 414W, 425E-H, 425W, 425X, 428) or SwedeHF, at the end of the year of the index date for the case and matched by gender, year of birth and county of residence at index. For posts with age ≥ 90 years, controls were only matched by gender and year of birth due to the smaller available number of controls.\n\nThe selection of controls was performed without replacement.\n\nA control was allowed to become a case after the year of the index date for the case.\n\nA full set of controls (n = 2) was not found for all cases:\n\n\n::: {.cell}\n::: {.cell-output-display}\n`````{=html}\n<table>\n <thead>\n  <tr>\n   <th style=\"text-align:left;\"> Population </th>\n   <th style=\"text-align:right;\"> No controls </th>\n   <th style=\"text-align:right;\"> Posts </th>\n   <th style=\"text-align:right;\"> Unique patients </th>\n  </tr>\n </thead>\n<tbody>\n  <tr>\n   <td style=\"text-align:left;\"> Case SwedeHF </td>\n   <td style=\"text-align:right;\"> 0 </td>\n   <td style=\"text-align:right;\"> 3849 </td>\n   <td style=\"text-align:right;\"> 2156 </td>\n  </tr>\n  <tr>\n   <td style=\"text-align:left;\"> Case SwedeHF </td>\n   <td style=\"text-align:right;\"> 1 </td>\n   <td style=\"text-align:right;\"> 17210 </td>\n   <td style=\"text-align:right;\"> 7319 </td>\n  </tr>\n  <tr>\n   <td style=\"text-align:left;\"> Case SwedeHF </td>\n   <td style=\"text-align:right;\"> 2 </td>\n   <td style=\"text-align:right;\"> 185575 </td>\n   <td style=\"text-align:right;\"> 104900 </td>\n  </tr>\n  <tr>\n   <td style=\"text-align:left;\"> Case NPR </td>\n   <td style=\"text-align:right;\"> 0 </td>\n   <td style=\"text-align:right;\"> 19057 </td>\n   <td style=\"text-align:right;\"> 19057 </td>\n  </tr>\n  <tr>\n   <td style=\"text-align:left;\"> Case NPR </td>\n   <td style=\"text-align:right;\"> 1 </td>\n   <td style=\"text-align:right;\"> 26433 </td>\n   <td style=\"text-align:right;\"> 26433 </td>\n  </tr>\n  <tr>\n   <td style=\"text-align:left;\"> Case NPR </td>\n   <td style=\"text-align:right;\"> 2 </td>\n   <td style=\"text-align:right;\"> 377386 </td>\n   <td style=\"text-align:right;\"> 377386 </td>\n  </tr>\n</tbody>\n</table>\n\n`````\n:::\n:::\n\n\n----\n\n## Inclusion/exclusion criteria\n\n\n::: {.cell}\n::: {.cell-output-display}\n`````{=html}\n<table>\n <thead>\n  <tr>\n   <th style=\"text-align:left;\"> Criteria </th>\n   <th style=\"text-align:right;\"> Case SwedeHF </th>\n   <th style=\"text-align:right;\"> Case NPR </th>\n   <th style=\"text-align:right;\"> Control SwedeHF </th>\n   <th style=\"text-align:right;\"> Control NPR </th>\n  </tr>\n </thead>\n<tbody>\n  <tr>\n   <td style=\"text-align:left;\"> No of posts recieved </td>\n   <td style=\"text-align:right;\"> 216652 </td>\n   <td style=\"text-align:right;\"> 471853 </td>\n   <td style=\"text-align:right;\"> 405913 </td>\n   <td style=\"text-align:right;\"> 802436 </td>\n  </tr>\n  <tr>\n   <td style=\"text-align:left;\"> Exclude posts with duplicated index dates </td>\n   <td style=\"text-align:right;\"> 216029 </td>\n   <td style=\"text-align:right;\">  </td>\n   <td style=\"text-align:right;\">  </td>\n   <td style=\"text-align:right;\">  </td>\n  </tr>\n  <tr>\n   <td style=\"text-align:left;\"> Exclude posts with with index date &lt; 2000-01-01 </td>\n   <td style=\"text-align:right;\"> 216026 </td>\n   <td style=\"text-align:right;\"> 437182 </td>\n   <td style=\"text-align:right;\"> 405907 </td>\n   <td style=\"text-align:right;\"> 799666 </td>\n  </tr>\n  <tr>\n   <td style=\"text-align:left;\"> Exclude posts with with index date &gt; 2021-12-31 </td>\n   <td style=\"text-align:right;\"> 207290 </td>\n   <td style=\"text-align:right;\"> 426074 </td>\n   <td style=\"text-align:right;\"> 388928 </td>\n   <td style=\"text-align:right;\"> 785550 </td>\n  </tr>\n  <tr>\n   <td style=\"text-align:left;\"> Exclude posts &lt; 18 years </td>\n   <td style=\"text-align:right;\"> 207277 </td>\n   <td style=\"text-align:right;\"> 424752 </td>\n   <td style=\"text-align:right;\"> 388903 </td>\n   <td style=\"text-align:right;\"> 782942 </td>\n  </tr>\n  <tr>\n   <td style=\"text-align:left;\"> Exclude posts that are not present in SCB register </td>\n   <td style=\"text-align:right;\"> 206875 </td>\n   <td style=\"text-align:right;\"> 423401 </td>\n   <td style=\"text-align:right;\"> 388903 </td>\n   <td style=\"text-align:right;\"> 782942 </td>\n  </tr>\n  <tr>\n   <td style=\"text-align:left;\"> Exclude posts with reused PINs </td>\n   <td style=\"text-align:right;\"> 206640 </td>\n   <td style=\"text-align:right;\"> 423026 </td>\n   <td style=\"text-align:right;\"> 388903 </td>\n   <td style=\"text-align:right;\"> 782942 </td>\n  </tr>\n  <tr>\n   <td style=\"text-align:left;\"> Exclude posts censored end fu &lt; index </td>\n   <td style=\"text-align:right;\"> 206634 </td>\n   <td style=\"text-align:right;\"> 422876 </td>\n   <td style=\"text-align:right;\"> 388838 </td>\n   <td style=\"text-align:right;\"> 782222 </td>\n  </tr>\n  <tr>\n   <td style=\"text-align:left;\"> Exclude controls without cases </td>\n   <td style=\"text-align:right;\"> 206634 </td>\n   <td style=\"text-align:right;\"> 422876 </td>\n   <td style=\"text-align:right;\"> 388838 </td>\n   <td style=\"text-align:right;\"> 782222 </td>\n  </tr>\n  <tr>\n   <td style=\"text-align:left;\"> Exclude posts with end of follow-up &lt;= index date (died in hospital) </td>\n   <td style=\"text-align:right;\"> 203425 </td>\n   <td style=\"text-align:right;\">  </td>\n   <td style=\"text-align:right;\">  </td>\n   <td style=\"text-align:right;\">  </td>\n  </tr>\n  <tr>\n   <td style=\"text-align:left;\"> Unique patients </td>\n   <td style=\"text-align:right;\"> 112423 </td>\n   <td style=\"text-align:right;\">  </td>\n   <td style=\"text-align:right;\">  </td>\n   <td style=\"text-align:right;\">  </td>\n  </tr>\n</tbody>\n</table>\n\n`````\n:::\n:::",
+    "supporting": [],
+    "filters": [
+      "rmarkdown/pagebreak.lua"
+    ],
+    "includes": {},
+    "engineDependencies": {},
+    "preserve": {},
+    "postProcess": true
+  }
+}

_freeze/site_libs/kePrint-0.0.1/kePrint.js

@@ -0,0 +1,8 @@
+$(document).ready(function(){
+    if (typeof $('[data-toggle="tooltip"]').tooltip === 'function') {
+        $('[data-toggle="tooltip"]').tooltip();
+    }
+    if ($('[data-toggle="popover"]').popover === 'function') {
+        $('[data-toggle="popover"]').popover();
+    }
+});