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1. cgmlst-dists cgmlst-dists Public

   Forked from tseemann/cgmlst-dists

   🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables

   C

2. RIVM-bioinformatics/AmpliGone RIVM-bioinformatics/AmpliGone Public

   A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment

   Python 13

3. RIVM-bioinformatics/TrueConsense RIVM-bioinformatics/TrueConsense Public

   TrueConsense is a consensus caller for viral-targets that create biologically correct consensus sequences. TrueConsense keeps track of open reading frames, compensates for common sequencing or alig…

   Python 5 1

4. RIVM-bioinformatics/ViroConstrictor RIVM-bioinformatics/ViroConstrictor Public

   ViroConstrictor is a pipeline designed to process raw FastQ data from viral amplicon-based sequencing and generate biologically correct consensus sequences of the given viral genome

   Python 5 2

5. RIVM-bioinformatics/juno-cgmlst RIVM-bioinformatics/juno-cgmlst Public

   Pipeline to perform cgMLST (or wgMLST) analysis. At the moment it just handles few genera for cgMLST

   Python 1

6. RIVM-bioinformatics/juno-library RIVM-bioinformatics/juno-library Public

   Package containing the basic classes that are used as base for the wrappers of the other Juno pipelines

   Python 1