New release preparation.

JuliaInterop · Jun 6, 2019 · d3f94fa · d3f94fa
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diff --git a/.github/issue_template.md b/.github/issue_template.md
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,8 +1,8 @@
 Package: JuliaCall
 Type: Package
 Title: Seamless Integration Between R and 'Julia'
-Version: 0.16.5.9000
-Date: 2019-5-29
+Version: 0.16.6
+Date: 2019-6-5
 Authors@R: c(
     person("Changcheng", "Li", , "cxl508@psu.edu", c("aut", "cre")),
     person("Randy", "Lai", role = "ctb"),

diff --git a/NEWS.md b/NEWS.md
@@ -1,6 +1,7 @@
 # JuliaCall 0.16.5.9000
 
 * `julia_install_package` accepts URLs to install packages, fix #106.
+* Do not let print in startup files to mess up with `julia_setup`, fix #105.
 
 # JuliaCall 0.16.5
 

diff --git a/README.Rmd b/README.Rmd
@@ -156,9 +156,9 @@ you may report it using the link: <https://github.com/Non-Contradiction/JuliaCal
 `JuliaCall` is under active development now.
 Any suggestion or issue reporting is welcome!
 You may report it using the link: <https://github.com/Non-Contradiction/JuliaCall/issues/new>, or email me at <lch34677@gmail.com> or <cxl508@psu.edu>.
-You are welcome to use the [issue template](.github/issue_template.md)
-and the [pull request template](.github/pull_request_template.md).
-The [contributing guide](.github/CONTRIBUTING.md) provides some guidance for making contributions.
+You are welcome to use the [issue template](https://github.com/Non-Contradiction/JuliaCall/blob/master/.github/ISSUE_TEMPLATE/bug_report.md)
+and the [pull request template](https://github.com/Non-Contradiction/JuliaCall/blob/master/.github/pull_request_template.md).
+The [contributing guide](https://github.com/Non-Contradiction/JuliaCall/blob/master/.github/CONTRIBUTING.md) provides some guidance for making contributions.
 
 ### Checking `JuliaCall` Package
 
@@ -181,7 +181,7 @@ To check and test the `JuliaCall` package, you need to have the source package.
 
 ## Code of Conduct
 
-Please note that the `JuliaCall` project is released with a [Contributor Code of Conduct](CODE_OF_CONDUCT.md). By contributing to this project, you agree to abide by its terms.
+Please note that the `JuliaCall` project is released with a [Contributor Code of Conduct](https://github.com/Non-Contradiction/JuliaCall/blob/master/CODE_OF_CONDUCT.md). By contributing to this project, you agree to abide by its terms.
 
 ## Citing
 

diff --git a/README.md b/README.md
@@ -262,10 +262,13 @@ at <lch34677@gmail.com> or <cxl508@psu.edu>.
 reporting is welcome\! You may report it using the link:
 <https://github.com/Non-Contradiction/JuliaCall/issues/new>, or email me
 at <lch34677@gmail.com> or <cxl508@psu.edu>. You are welcome to use the
-[issue template](.github/issue_template.md) and the [pull request
-template](.github/pull_request_template.md). The [contributing
-guide](.github/CONTRIBUTING.md) provides some guidance for making
-contributions.
+[issue
+template](https://github.com/Non-Contradiction/JuliaCall/blob/master/.github/ISSUE_TEMPLATE/bug_report.md)
+and the [pull request
+template](https://github.com/Non-Contradiction/JuliaCall/blob/master/.github/pull_request_template.md).
+The [contributing
+guide](https://github.com/Non-Contradiction/JuliaCall/blob/master/.github/CONTRIBUTING.md)
+provides some guidance for making contributions.
 
 ### Checking `JuliaCall` Package
 
@@ -303,8 +306,9 @@ package. You can
 ## Code of Conduct
 
 Please note that the `JuliaCall` project is released with a [Contributor
-Code of Conduct](CODE_OF_CONDUCT.md). By contributing to this project,
-you agree to abide by its terms.
+Code of
+Conduct](https://github.com/Non-Contradiction/JuliaCall/blob/master/CODE_OF_CONDUCT.md).
+By contributing to this project, you agree to abide by its terms.
 
 ## Citing
 

diff --git a/cran-comments.md b/cran-comments.md
@@ -1,8 +1,8 @@
 ## Test environments
-* local osx 10.14.3, R 3.5.3
-* osx 10.13.3 (on travis-ci), R 3.5.3
-* ubuntu 14.04.5 (on travis-ci), R 3.5.2
-* windows (on appveyor), R 3.5.3 and r-devel with Rtools35
+* local osx 10.14.5, R 3.6.0
+* osx 10.13.3 (on travis-ci), R 3.6.0
+* ubuntu 14.04.5 (on travis-ci), R 3.6.0
+* windows (on appveyor), R 3.6.0 and r-devel with Rtools35
 * win-builder (devel, release and oldrelease)
 
 ## R CMD check results
@@ -14,9 +14,16 @@ I have also run R CMD check on downstream dependencies of JuliaCall
 (https://github.com/Non-Contradiction/JuliaCall/tree/master/revdep).
 The summary generated by revdepcheck is at (https://github.com/Non-Contradiction/JuliaCall/tree/master/revdep/README.md)
 and (https://github.com/Non-Contradiction/JuliaCall/tree/master/revdep/problems.md).
-There are three downstream dependencies currently -- convexjlr, diffeqr and knitr.
+There are 4 downstream dependencies currently -- convexjlr, diffeqr, knitr, and buildmer.
 The checking result of convexjlr is:
 0 errors | 0 warnings | 0 notes
+
+The checking result of knitr is:
+0 errors | 0 warnings | 0 notes
+
+The checking result of buildmer is:
+0 errors | 0 warnings | 0 notes
+
 The checking result of diffeqr is:
 0 errors | 0 warnings | 1 note
 ```
@@ -27,5 +34,3 @@ checking installed package size ... NOTE
 ```
 The size of package diffeqr is larger because of its vignettes,
 which has nothing to do with JuliaCall.
-The checking result of knitr is:
-0 errors | 0 warnings | 0 notes
diff --git a/docs/CODE_OF_CONDUCT.html b/docs/CODE_OF_CONDUCT.html
diff --git a/docs/CONTRIBUTING.html b/docs/CONTRIBUTING.html
diff --git a/docs/LICENSE-text.html b/docs/LICENSE-text.html
diff --git a/docs/LICENSE.html b/docs/LICENSE.html
diff --git a/docs/articles/JuliaCall_in_Jupyter_R_Notebook.html b/docs/articles/JuliaCall_in_Jupyter_R_Notebook.html
diff --git a/docs/articles/Julia_in_RMarkdown.html b/docs/articles/Julia_in_RMarkdown.html
diff --git a/docs/articles/index.html b/docs/articles/index.html
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diff --git a/docs/authors.html b/docs/authors.html