change how we call MPI

JuliaGeodynamics · Oct 8, 2024 · 7ca342a · 7ca342a
1 parent 1eb6af1
commit 7ca342a
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Showing 3 changed files with 32 additions and 4 deletions.
diff --git a/src/Run.jl b/src/Run.jl
@@ -9,7 +9,24 @@ include("run_lamem.jl")
 include("run_lamem_save_grid.jl")
 include("utils_Run.jl")
 
-const mpiexec = MPI.mpiexec()
+#setup MPI
+if isdefined(LaMEM_jll,:MPICH_jll)
+    const mpiexec = LaMEM_jll.MPICH_jll.mpiexec()
+    const MPI_LIBPATH = LaMEM_jll.MPICH_jll.LIBPATH
+elseif isdefined(LaMEM_jll,:MicrosoftMPI_jll) 
+    const mpiexec = LaMEM_jll.MicrosoftMPI_jll.mpiexec()
+    const MPI_LIBPATH = LaMEM_jll.MicrosoftMPI_jll.LIBPATH
+elseif isdefined(LaMEM_jll,:OpenMPI_jll) 
+    const mpiexec = LaMEM_jll.OpenMPI_jll.mpiexec()
+    const MPI_LIBPATH = LaMEM_jll.OpenMPI_jll.LIBPATH
+elseif isdefined(LaMEM_jll,:MPItrampoline_jll) 
+    const mpiexec = LaMEM_jll.MPItrampoline_jll.mpiexec()
+    const MPI_LIBPATH = LaMEM_jll.MPItrampoline_jll.LIBPATH
+else
+    println("Be careful! No MPI library detected; parallel runs won't work")
+    const mpiexec = nothing
+    const MPI_LIBPATH = Ref{String}("")
+end
 
 
 end
diff --git a/src/run_lamem.jl b/src/run_lamem.jl
@@ -18,6 +18,14 @@ function deactivate_multithreading(cmd::Cmd)
     return cmd
 end
 
+# Shamelessly stolen from the tests of LBT 
+if Sys.iswindows()
+    pathsep = ';'
+elseif Sys.isapple()
+    pathsep = ':'
+else
+    pathsep = ':'
+end
 
 """ 
     run_lamem(ParamFile::String, cores::Int64=1, args:String=""; wait=true, deactivate_multithreads=true)
@@ -56,7 +64,10 @@ function run_lamem(ParamFile::String, cores::Int64=1, args::String=""; wait=true
         run(cmd, wait=wait);
     else
         # set correct environment
-        mpirun = setenv(mpiexec,  LaMEM_jll.LaMEM().env);
+        #mpirun = setenv(mpiexec,  LaMEM_jll.LaMEM().env);
+        key = LaMEM_jll.JLLWrappers.JLLWrappers.LIBPATH_env
+        mpirun = addenv(mpiexec, key=>join((LaMEM_jll.LIBPATH[], MPI_LIBPATH[]), pathsep));
+
 
         # create command-line object
         cmd = `$(mpirun) -n $cores_compute $(LaMEM_jll.LaMEM().exec) -ParamFile $(ParamFile) $args`

diff --git a/test/test_julia_setups.jl b/test/test_julia_setups.jl
@@ -12,7 +12,7 @@ using GeophysicalModelGenerator
     model  = Model(Grid(nel=(16,16,16), x=[-2,2], coord_y=[-1,1], coord_z=[-1,1]),
                    Time(nstep_max=2, dt=1, dt_max=10), 
                    Solver(SolverType="multigrid", MGLevels=2),
-                   Output(out_dir="example_1"))
+                   Output(out_dir="example_1", out_dev_stress=1))
 
     # Specify material properties
     matrix = Phase(ID=0,Name="matrix",eta=1e20,rho=3000)
@@ -27,7 +27,7 @@ using GeophysicalModelGenerator
 
     # read last timestep
     data,time = read_LaMEM_timestep(model,last=true);
-
+    
     @test  sum(data.fields.velocity[3][:,:,:]) ≈ 0.10747005f0 rtol=1e-1 # check Vz
 #    @test  sum(data.fields.velocity[3][:,:,:]) ≈ 0.10866211f0 # check Vz