Merge pull request #153 from JonathanShor/dev_4.2

Dev 4.2
JonathanShor · Mar 12, 2022 · 420387a · 420387a
2 parents 1b852c3 + 21ddae8
commit 420387a
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Showing 3 changed files with 9 additions and 9 deletions.
diff --git a/doubletdetection/doubletdetection.py b/doubletdetection/doubletdetection.py
@@ -8,8 +8,8 @@
 import anndata
 import numpy as np
 import phenograph
-import scipy.sparse as sp_sparse
 import scanpy as sc
+import scipy.sparse as sp_sparse
 from scipy.sparse import csr_matrix
 from scipy.stats import hypergeom
 from sklearn.utils import check_array
@@ -428,7 +428,7 @@ def _set_clustering_kwargs(self):
                 warnings.warn(warn_msg)
         else:
             if "directed" not in self.clustering_kwargs:
-                self.clustering_kwargs["directed"] = True
+                self.clustering_kwargs["directed"] = False
             if "resolution" not in self.clustering_kwargs:
                 self.clustering_kwargs["resolution"] = 4
             if "key_added" in self.clustering_kwargs:

diff --git a/pyproject.toml b/pyproject.toml
@@ -20,7 +20,7 @@ packages = [
   {include = "doubletdetection"},
 ]
 readme = "README.md"
-version = "4.1"
+version = "4.2"
 
 [tool.poetry.dependencies]
 anndata = ">=0.6"

diff --git a/tests/notebooks/PBMC_10k_vignette.ipynb b/tests/notebooks/PBMC_10k_vignette.ipynb