Remove preferences and globals from tests

src/main/java/org/jabref/Globals.java

@@ -6,7 +6,7 @@
 import org.jabref.collab.FileUpdateMonitor;
 import org.jabref.gui.GlobalFocusListener;
 import org.jabref.gui.StateManager;
-import org.jabref.gui.keyboard.KeyBindingPreferences;
+import org.jabref.gui.keyboard.KeyBindingRepository;
 import org.jabref.gui.util.DefaultTaskExecutor;
 import org.jabref.gui.util.TaskExecutor;
 import org.jabref.logic.importer.ImportFormatReader;
@@ -48,7 +48,7 @@ public class Globals {
      */
     public static StateManager stateManager = new StateManager();
     // Key binding preferences
-    private static KeyBindingPreferences keyPrefs;
+    private static KeyBindingRepository keyBindingRepository;
     // Background tasks
     private static GlobalFocusListener focusListener;
     private static FileUpdateMonitor fileUpdateMonitor;
@@ -58,11 +58,11 @@ private Globals() {
     }
 
     // Key binding preferences
-    public static KeyBindingPreferences getKeyPrefs() {
-        if (keyPrefs == null) {
-            keyPrefs = new KeyBindingPreferences(prefs);
+    public static KeyBindingRepository getKeyPrefs() {
+        if (keyBindingRepository == null) {
+            keyBindingRepository = prefs.getKeyBindingRepository();
         }
-        return keyPrefs;
+        return keyBindingRepository;
     }
 
 

src/main/java/org/jabref/gui/DefaultInjector.java

@@ -3,8 +3,9 @@
 import java.util.function.Function;
 
 import org.jabref.Globals;
-import org.jabref.gui.keyboard.KeyBindingPreferences;
+import org.jabref.gui.keyboard.KeyBindingRepository;
 import org.jabref.gui.util.TaskExecutor;
+import org.jabref.logic.journals.JournalAbbreviationLoader;
 import org.jabref.preferences.JabRefPreferences;
 
 import com.airhacks.afterburner.injection.Injector;
@@ -28,8 +29,10 @@ private static Object createDependency(Class<?> clazz) {
             return Globals.taskExecutor;
         } else if (clazz == JabRefPreferences.class) {
             return Globals.prefs;
-        } else if (clazz == KeyBindingPreferences.class) {
+        } else if (clazz == KeyBindingRepository.class) {
             return Globals.getKeyPrefs();
+        } else if (clazz == JournalAbbreviationLoader.class) {
+            return Globals.journalAbbreviationLoader;
         } else if (clazz == StateManager.class) {
             return Globals.stateManager;
         } else {

src/main/java/org/jabref/gui/FXDialog.java

@@ -16,7 +16,7 @@
 import org.jabref.Globals;
 import org.jabref.JabRefGUI;
 import org.jabref.gui.keyboard.KeyBinding;
-import org.jabref.gui.keyboard.KeyBindingPreferences;
+import org.jabref.gui.keyboard.KeyBindingRepository;
 
 /**
  * This class provides a super class for all dialogs implemented in JavaFX.
@@ -101,9 +101,9 @@ public FXDialog(AlertType type, boolean isModal) {
 
         dialogWindow.setOnCloseRequest(evt -> this.close());
 
-        dialogWindow.getScene().setOnKeyPressed(evt -> {
-            KeyBindingPreferences keyPreferences = Globals.getKeyPrefs();
-            if (keyPreferences.checkKeyCombinationEquality(KeyBinding.CLOSE_DIALOG, evt)) {
+        dialogWindow.getScene().setOnKeyPressed(event -> {
+            KeyBindingRepository keyBindingRepository = Globals.getKeyPrefs();
+            if (keyBindingRepository.checkKeyCombinationEquality(KeyBinding.CLOSE_DIALOG, event)) {
                 dialogWindow.close();
             }
         });

src/main/java/org/jabref/gui/errorconsole/ErrorConsoleController.java

@@ -22,7 +22,7 @@
 import org.jabref.gui.DialogService;
 import org.jabref.gui.IconTheme;
 import org.jabref.gui.keyboard.KeyBinding;
-import org.jabref.gui.keyboard.KeyBindingPreferences;
+import org.jabref.gui.keyboard.KeyBindingRepository;
 import org.jabref.logic.util.BuildInfo;
 
 public class ErrorConsoleController extends AbstractController<ErrorConsoleViewModel> {
@@ -36,7 +36,7 @@ public class ErrorConsoleController extends AbstractController<ErrorConsoleViewM
     @Inject private DialogService dialogService;
     @Inject private ClipBoardManager clipBoardManager;
     @Inject private BuildInfo buildInfo;
-    @Inject private KeyBindingPreferences keyBindingPreferences;
+    @Inject private KeyBindingRepository keyBindingRepository;
 
     @FXML
     private void initialize() {
@@ -94,7 +94,7 @@ public void updateItem(LogEventViewModel event, boolean empty) {
 
     @FXML
     private void copySelectedLogEntries(KeyEvent event) {
-        if (keyBindingPreferences.checkKeyCombinationEquality(KeyBinding.COPY, event)) {
+        if (keyBindingRepository.checkKeyCombinationEquality(KeyBinding.COPY, event)) {
             ObservableList<LogEventViewModel> selectedEntries = messagesListView.getSelectionModel().getSelectedItems();
             viewModel.copyLog(selectedEntries);
         }

src/main/java/org/jabref/gui/importer/fetcher/IEEEXploreFetcher.java

@@ -29,6 +29,7 @@
 import org.jabref.logic.importer.ParseException;
 import org.jabref.logic.importer.fileformat.BibtexParser;
 import org.jabref.logic.journals.JournalAbbreviationLoader;
+import org.jabref.logic.journals.JournalAbbreviationPreferences;
 import org.jabref.logic.l10n.Localization;
 import org.jabref.logic.net.URLDownload;
 import org.jabref.model.entry.BibEntry;
@@ -67,9 +68,8 @@ public class IEEEXploreFetcher implements EntryFetcher {
     private final UnitsToLatexFormatter unitsToLatexFormatter = new UnitsToLatexFormatter();
     private final HtmlToLatexFormatter htmlToLatexFormatter = new HtmlToLatexFormatter();
     private final JCheckBox absCheckBox = new JCheckBox(Localization.lang("Include abstracts"), false);
-
-    private boolean shouldContinue;
     private final JournalAbbreviationLoader abbreviationLoader;
+    private boolean shouldContinue;
 
 
     public IEEEXploreFetcher(JournalAbbreviationLoader abbreviationLoader) {
@@ -406,9 +406,10 @@ private BibEntry cleanup(BibEntry entry) {
                 fullName = fullName.replace(" - ", "-"); //IEE Proceedings-
 
                 fullName = fullName.trim();
-                if (Globals.prefs.getBoolean(JabRefPreferences.USE_IEEE_ABRV)) {
+                JournalAbbreviationPreferences journalAbbreviationPreferences = Globals.prefs.getJournalAbbreviationPreferences();
+                if (journalAbbreviationPreferences.useIEEEAbbreviations()) {
                     fullName = abbreviationLoader
-                            .getRepository(Globals.prefs.getJournalAbbreviationPreferences())
+                            .getRepository(journalAbbreviationPreferences)
                             .getMedlineAbbreviation(fullName)
                             .orElse(fullName);
                 }

src/main/java/org/jabref/gui/journals/ManageJournalAbbreviationsController.java

@@ -20,10 +20,13 @@
 import org.jabref.gui.IconTheme;
 import org.jabref.gui.util.TaskExecutor;
 import org.jabref.gui.util.ValueTableCellFactory;
-import org.jabref.preferences.JabRefPreferences;
+import org.jabref.logic.journals.JournalAbbreviationLoader;
+import org.jabref.preferences.PreferencesService;
 
 public class ManageJournalAbbreviationsController extends AbstractController<ManageJournalAbbreviationsViewModel> {
 
+    @FXML public Label loadingLabel;
+    @FXML public ProgressIndicator progressIndicator;
     @FXML private TableView<AbbreviationViewModel> journalAbbreviationsTable;
     @FXML private TableColumn<AbbreviationViewModel, String> journalTableNameColumn;
     @FXML private TableColumn<AbbreviationViewModel, String> journalTableAbbreviationColumn;
@@ -34,17 +37,14 @@ public class ManageJournalAbbreviationsController extends AbstractController<Man
     @FXML private Button addJournalFileButton;
     @FXML private Button addNewJournalFileButton;
     @FXML private Button removeJournalAbbreviationsButton;
-    @FXML public Label loadingLabel;
-    @FXML public ProgressIndicator progressIndicator;
-
-
-    @Inject private JabRefPreferences preferences;
+    @Inject private PreferencesService preferences;
     @Inject private DialogService dialogService;
     @Inject private TaskExecutor taskExecutor;
+    @Inject private JournalAbbreviationLoader journalAbbreviationLoader;
 
     @FXML
     private void initialize() {
-        viewModel = new ManageJournalAbbreviationsViewModel(preferences, dialogService, taskExecutor);
+        viewModel = new ManageJournalAbbreviationsViewModel(preferences, dialogService, taskExecutor, journalAbbreviationLoader);
 
         setUpTable();
         setBindings();

src/main/java/org/jabref/gui/journals/ManageJournalAbbreviationsViewModel.java

@@ -25,13 +25,11 @@
 import org.jabref.logic.journals.JournalAbbreviationPreferences;
 import org.jabref.logic.l10n.Localization;
 import org.jabref.logic.util.FileExtensions;
-import org.jabref.preferences.JabRefPreferences;
+import org.jabref.preferences.PreferencesService;
 
 import org.apache.commons.logging.Log;
 import org.apache.commons.logging.LogFactory;
 
-import static org.jabref.Globals.journalAbbreviationLoader;
-
 /**
  * This class provides a model for managing journal abbreviation lists.
  * It provides all necessary methods to create, modify or delete journal
@@ -51,14 +49,18 @@ public class ManageJournalAbbreviationsViewModel extends AbstractViewModel {
     private final SimpleBooleanProperty isLoadingBuiltIn = new SimpleBooleanProperty(false);
     private final SimpleBooleanProperty isLoadingIeee = new SimpleBooleanProperty(false);
     private final SimpleBooleanProperty isAbbreviationEditableAndRemovable = new SimpleBooleanProperty();
-    private final JabRefPreferences preferences;
+    private final PreferencesService preferences;
     private final DialogService dialogService;
     private final TaskExecutor taskExecutor;
+    private final JournalAbbreviationPreferences abbreviationsPreferences;
+    private final JournalAbbreviationLoader journalAbbreviationLoader;
 
-    public ManageJournalAbbreviationsViewModel(JabRefPreferences preferences, DialogService dialogService, TaskExecutor taskExecutor) {
+    public ManageJournalAbbreviationsViewModel(PreferencesService preferences, DialogService dialogService, TaskExecutor taskExecutor, JournalAbbreviationLoader journalAbbreviationLoader) {
         this.preferences = Objects.requireNonNull(preferences);
         this.dialogService = Objects.requireNonNull(dialogService);
         this.taskExecutor = Objects.requireNonNull(taskExecutor);
+        this.journalAbbreviationLoader = Objects.requireNonNull(journalAbbreviationLoader);
+        this.abbreviationsPreferences = preferences.getJournalAbbreviationPreferences();
 
         abbreviationsCount.bind(abbreviations.sizeProperty());
         currentAbbreviation.addListener((observable, oldvalue, newvalue) -> {
@@ -124,7 +126,7 @@ void addBuiltInLists() {
 
         BackgroundTask
                 .wrap(() -> {
-                    if (preferences.getBoolean(JabRefPreferences.USE_IEEE_ABRV)) {
+                    if (abbreviationsPreferences.useIEEEAbbreviations()) {
                         return JournalAbbreviationLoader.getOfficialIEEEAbbreviations();
                     } else {
                         return JournalAbbreviationLoader.getStandardIEEEAbbreviations();
@@ -150,7 +152,7 @@ private void addList(String name, List<Abbreviation> abbreviations) {
      * Read all saved file paths and read their abbreviations
      */
     public void createFileObjects() {
-        List<String> externalFiles = preferences.getStringList(JabRefPreferences.EXTERNAL_JOURNAL_LISTS);
+        List<String> externalFiles = abbreviationsPreferences.getExternalJournalLists();
         externalFiles.forEach(name -> openFile(Paths.get(name)));
     }
 
@@ -316,14 +318,14 @@ public void saveJournalAbbreviationFiles() {
      * This method stores all file paths of the files in the journalFiles property
      * to the global JabRef preferences. Pseudo abbreviation files will not be stored.
      */
-    public void saveExternalFilesList() {
+    private void saveExternalFilesList() {
         List<String> extFiles = new ArrayList<>();
         journalFiles.forEach(file -> {
             if (!file.isBuiltInListProperty().get()) {
                 file.getAbsolutePath().ifPresent(path -> extFiles.add(path.toAbsolutePath().toString()));
             }
         });
-        preferences.putStringList(JabRefPreferences.EXTERNAL_JOURNAL_LISTS, extFiles);
+        abbreviationsPreferences.setExternalJournalLists(extFiles);
     }
 
     /**
@@ -346,8 +348,11 @@ public void selectLastJournalFile() {
     public void saveEverythingAndUpdateAutoCompleter() {
         saveExternalFilesList();
         saveJournalAbbreviationFiles();
+
         // Update journal abbreviation loader
-        journalAbbreviationLoader.update(JournalAbbreviationPreferences.fromPreferences(preferences));
+        journalAbbreviationLoader.update(abbreviationsPreferences);
+
+        preferences.storeJournalAbbreviationPreferences(abbreviationsPreferences);
     }
 
     public SimpleListProperty<AbbreviationsFileViewModel> journalFilesProperty() {