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* Add oaDOI fulltext fetcher * Rename to OpenAccessDoi
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58 changes: 58 additions & 0 deletions
58
src/main/java/org/jabref/logic/importer/fetcher/OpenAccessDoi.java
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,58 @@ | ||
| package org.jabref.logic.importer.fetcher; | ||
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| import java.io.IOException; | ||
| import java.net.MalformedURLException; | ||
| import java.net.URL; | ||
| import java.util.Objects; | ||
| import java.util.Optional; | ||
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| import org.jabref.logic.importer.FulltextFetcher; | ||
| import org.jabref.model.entry.BibEntry; | ||
| import org.jabref.model.entry.FieldName; | ||
| import org.jabref.model.entry.identifier.DOI; | ||
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| import com.mashape.unirest.http.HttpResponse; | ||
| import com.mashape.unirest.http.JsonNode; | ||
| import com.mashape.unirest.http.Unirest; | ||
| import com.mashape.unirest.http.exceptions.UnirestException; | ||
| import org.json.JSONObject; | ||
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| /** | ||
| * A fulltext fetcher that uses <a href="https://oadoi.org/">oaDOI</a>. | ||
| * | ||
| * @implSpec API is documented at https://oadoi.org/api/v2 | ||
| */ | ||
| public class OpenAccessDoi implements FulltextFetcher { | ||
| private static String API_URL = "https://api.oadoi.org/v2/"; | ||
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| @Override | ||
| public Optional<URL> findFullText(BibEntry entry) throws IOException { | ||
| Objects.requireNonNull(entry); | ||
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| Optional<DOI> doi = entry.getField(FieldName.DOI) | ||
| .flatMap(DOI::parse); | ||
| if (doi.isPresent()) { | ||
| try { | ||
| return findFullText(doi.get()); | ||
| } catch (UnirestException e) { | ||
| throw new IOException(e); | ||
| } | ||
| } else { | ||
| return Optional.empty(); | ||
| } | ||
| } | ||
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| public Optional<URL> findFullText(DOI doi) throws UnirestException, MalformedURLException { | ||
| HttpResponse<JsonNode> jsonResponse = Unirest.get(API_URL + doi.getDOI() + "?email=developers@jabref.org") | ||
| .header("accept", "application/json") | ||
| .asJson(); | ||
| JSONObject root = jsonResponse.getBody().getObject(); | ||
| Optional<String> url = Optional.ofNullable(root.optJSONObject("best_oa_location")) | ||
| .map(location -> location.optString("url")); | ||
| if (url.isPresent()) { | ||
| return Optional.of(new URL(url.get())); | ||
| } else { | ||
| return Optional.empty(); | ||
| } | ||
| } | ||
| } |
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43 changes: 43 additions & 0 deletions
43
src/test/java/org/jabref/logic/importer/fetcher/OpenAccessDoiTest.java
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,43 @@ | ||
| package org.jabref.logic.importer.fetcher; | ||
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| import java.io.IOException; | ||
| import java.net.URL; | ||
| import java.util.Optional; | ||
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| import org.jabref.model.entry.BibEntry; | ||
| import org.jabref.testutils.category.FetcherTest; | ||
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| import org.junit.jupiter.api.BeforeEach; | ||
| import org.junit.jupiter.api.Test; | ||
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| import static org.junit.jupiter.api.Assertions.assertEquals; | ||
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| @FetcherTest | ||
| class OpenAccessDoiTest { | ||
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| private OpenAccessDoi finder; | ||
| private BibEntry entry; | ||
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| @BeforeEach | ||
| void setUp() { | ||
| finder = new OpenAccessDoi(); | ||
| entry = new BibEntry(); | ||
| } | ||
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| @Test | ||
| void findByDOI() throws IOException { | ||
| entry.setField("doi", "10.1038/nature12373"); | ||
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| assertEquals( | ||
| Optional.of(new URL("https://dash.harvard.edu/bitstream/handle/1/12285462/Nanometer-Scale%20Thermometry.pdf?sequence=1")), | ||
| finder.findFullText(entry) | ||
| ); | ||
| } | ||
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| @Test | ||
| void notFoundByDOI() throws IOException { | ||
| entry.setField("doi", "10.1186/unknown-doi"); | ||
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| assertEquals(Optional.empty(), finder.findFullText(entry)); | ||
| } | ||
| } |