rename app to frontend

.env.TEMPLATE

@@ -11,10 +11,10 @@
 # specified environment
 DEFAULT_ENV=dev
 
-# if 0, doesn't open a browser to the frontend webapp on a normal stack launch
+# if 0, doesn't open a browser to the frontend web app on a normal stack launch
 DO_OPEN_BROWSER=1
 
-# app database (postgres)
+# database (postgres)
 POSTGRES_USER=molevolvr
 POSTGRES_PASSWORD=
 POSTGRES_DB=molevolvr

README.md

@@ -1,7 +1,7 @@
 # MolEvolvR Stack
 
 This repo contains the implementation of the MolEvolvR stack, i.e.:
-- `app`: the frontend webapp, written in React
+- `frontend`: the frontend web app, written in React
 - `backend`: a backend written in [Plumber](https://www.rplumber.io/index.html)
 - `cluster`: the containerized SLURM "cluster" on which jobs are run
 - `services`: a collection of services on which the stack relies:

docker-compose.override.yml

@@ -14,12 +14,12 @@ services:
     depends_on:
       - "dev-db"
 
-  app:
+  frontend:
     build:
-      context: ./app
+      context: ./frontend
       target: dev
     volumes:
-      - ./app/src:/app/src
+      - ./frontend:/app/frontend
     environment:
       - 'VITE_API=http://localhost:9050'
     ports:

docker-compose.prod.yml

@@ -1,16 +1,16 @@
 volumes:
-  app_bundle:
+  frontend_dist:
   caddy_data:
   caddy_config:
 
 services:
-  app:
+  frontend:
     image: molevolvr-frontend
     build:
-      context: ./app
+      context: ./frontend
       target: release
     volumes:
-      - app_bundle:/app/dist
+      - frontend_dist:/app/frontend/dist
     depends_on:
       - backend
 
@@ -20,9 +20,9 @@ services:
       - "80:80"
       - "443:443"
     volumes:
-      - app_bundle:/srv
+      - frontend_dist:/srv
       - ./services/caddy/Caddyfile:/etc/caddy/Caddyfile
       - caddy_data:/data
       - caddy_config:/config
     depends_on:
-      - app
+      - frontend

docker-compose.yml

@@ -18,10 +18,10 @@ services:
       db:
         condition: service_healthy
 
-  app:
-    hostname: app-${TARGET_ENV}
+  frontend:
+    hostname: frontend-${TARGET_ENV}
     image: molevolvr-frontend
-    build: ./app
+    build: ./frontend
     depends_on:
       - backend
 

run_stack.sh

@@ -35,7 +35,7 @@
 #
 # the current environments are as follows (contact FSA for details):
 # - prod: the production environment, which runs the full stack, including the
-#   shiny app, the job scheduler, and the accounting database. it's the most
+#   web app, the job scheduler, and the accounting database. it's the most
 #   resource-intensive environment, and is intended for use in production.
 # - dev/staging: these are effectively dev environments that specific users run
 #   on the server for testing purposes.
@@ -140,16 +140,6 @@ case ${TARGET_ENV} in
         # watch the logs after, since we detached after bringing up the stack
         POST_LAUNCH_CMD="${COMPOSE_CMD} logs -f"
         ;;
-    "app")
-        # launches just the services necessary to run the shiny app, for frontend development.
-        # note that you won't be able to submit jobs or query the accounting database.
-        DEFAULT_ARGS="up"
-        COMPOSE_CMD="docker compose -f docker-compose.apponly.yml"
-        DO_CLEAR="1"
-        SKIP_BUILD="1" # don't build images for the app environment, since it uses so few of them
-        # watch the logs after, since we detached after bringing up the stack
-        # POST_LAUNCH_CMD="${COMPOSE_CMD} logs -f app"
-        ;;
     *)
         echo "ERROR: Unknown target environment: ${TARGET_ENV}"
         exit 1