updated argparsing test for when fasta file is in cwd and args.output…

…_path is set to None
JLSteenwyk · Jul 26, 2022 · fe56f73 · fe56f73
1 parent cf193fc
commit fe56f73
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Showing 2 changed files with 7 additions and 1 deletion.
diff --git a/orthosnap/args_processing.py b/orthosnap/args_processing.py
@@ -53,7 +53,7 @@ def process_args(args) -> dict:
             output_path = output_path + "/"
     else:
         output_path = re.sub("/[^/]+$", '', fasta)
-        if not output_path:
+        if output_path == fasta:
             output_path = "./"
         elif not output_path.endswith("/"):
             output_path = output_path + "/"

diff --git a/tests/unit/test_args_parsing.py b/tests/unit/test_args_parsing.py
@@ -123,3 +123,9 @@ def test_output_path_no_slash(self, args):
         args.output_path = "./tests/samples"
         res = process_args(args)
         assert res["output_path"] == "./tests/samples/"
+
+    def test_output_path_none(self, args):
+        args.fasta = "requirements.txt" # fake stand in file
+        args.output_path = None
+        res = process_args(args)
+        assert res["output_path"] == "./"