updated Dayna's docs in bio

docs/about/index.rst

@@ -116,10 +116,11 @@ tree of life, and the evolution of human pregnancy. Find out more information at
 
 |DCGoltz|
 
-Dayna is a Vanderbilt University graduate and studied Health Policy. Her interests and
-studies span fields related to medicine, global health, health disparities, and programming.
-She is currently planning to attend medical school beginning in 2022 and hopes to help
-shape the field of medicine and reduce health disparities using an interdisciplinary approach. 
+Dayna is a medical student at University of South Florida Morsani College of Medicine. She is
+also a Vanderbilt University graduate, where she studied Health Policy. Here interests and studies
+span fields related to medicine, global health, health disparities, programming, and the
+intersection of technology and medicine. She hopes to shape the field of medicine and reduce
+health disparities using an interdisciplinary approach.
 
 .. |DCGoltz| image:: ../_static/img/DCGoltz.jpg
    :width: 35%

tests/samples/OG0000010.renamed.fa.mafft.clipkit.orthosnap.4.fa

@@ -1,100 +1,100 @@
->Aspergillus_oerlinghausenensis_CBS139183|A_oerling_CBS139183_05774-RA-duplicate
-M-----------------------------------------------------------
+>Aspergillus_oerlinghausenensis_CBS139183|A_oerling_CBS139183_09150-RA
+MGSMHEAG----------------------------------------------------
 ------------------------------------------------------------
 ------------------------------------------------------------
+----------------------SRPAADAD---MDTDR------VHPEAV----------
+-----SNSERDFEKQDSKPEYRDAFGDEEYAEVKYKTLSWWQCGFLMVAETVSLGILSLP
+AVV---AALGLVPAIILLVALGLMSTYTGYTIGQFKWAYPHIHSMGDAGEVIMGRFGREL
+FGTGQLLLVVFIMASHILTFTVAMNSITDHGTCSIVFGVVGLVISFVLCLPRTLAKVSFL
+SVASFISVFSAVLIVMIAVGVQRPWHGSVNATVDTSLYKAFLAVCNIVFSFCRLFLHFIS
+FMDRTDRTAGHVAFFGFMAELRNPRDYPKSLFLLQGIDTCLYIVAAVVIYCYAGDDVTSP
+ALGSASTIVKKVAYGIALPTIIIGGVVNGHVACKYIYVRMWR-HSDRMHKRDLVATGSWV
+LIGLATWIVAWIIAEAIPVFNNLLSLVASLFASWFTYGFSALFWLYLNKGRFFSTPMKTA
+LTILNVVIMGIACCICGLGLYVSGKALHDDPSSASF------------------------
 ------------------------------------------------------------
 ------------------------------------------------------------
 ------------------------------------------------------------
-FGIGQLLFLIFLMASHILTFTVVFNTITNHGTCTIVFGVVGLVVSFIGALPRTMGKVYWM
-SMASCISIVTATVVTMIAIGVQAPDHVHVDATTEVSFQDAFLAVTNIIFAY---------
---------IAHVAFFGFISEMHDPRDFPKSLTMLQVVDTSLYIVTAMVIYRYAGPDVASP
-ALSSAGPLMKKVAYGLAIPTVVIAGVVFGHVACKYIYVRIFR-GSAHMHQNSFLAIGSWV
-AIALGVWVVAWVIAESIPVFNELLSLISSLFGSWFSYGLPAIFWLVMNKGRWFSTRSKIC
-LTIVNFLILAFACALCGMGLYVSGKSIHDSSSKASW------------------------
+---------------------------SCANNA---------------------------
 ------------------------------------------------------------
 ------------------------------------------------------------
 ------------------------------------------------------------
----------------------------TCKNNAT--------------------------
+>Aspergillus_fumigatus_Af293|EAL84262.1
+MGSMHEAG----------------------------------------------------
 ------------------------------------------------------------
 ------------------------------------------------------------
-----------------------------------------------------------TT
->Aspergillus_fumigatus_Af293|EAL85095.2-duplicate
-M---------------------MLWLK---------------------------------
+----------------------SRPAAGAD---MDTDR------VHPEAV----------
+-----SDNERDFEKQDSKPEYQDAFGDEEYAEVKYKTLSWC-------------------
 ------------------------------------------------------------
 ------------------------------------------------------------
---------------------RRNMLMGRRQMTRLEM------------------------
--------------------------KNAERSNIV-------SCRGVMVAENISLGILSLS
-SAV---ATLGIVPAVILLLGLSAISWYTGYIMGQFKLRFPQIHSMGDAGELLMGRFGREL
-FGIGQLLFLIFLMASHILTFSVVFNTITNHGTCTIVFGVVGLVVSFIGALPRTMGKVYWM
-SMASCISIVTATVVTMIAIGVQAPDHVHVNVTTKVSFQDAFLAVTNIIFAY---------
---------IAHVAFFGFISEMHDPRDFPKSLTMLQVVDTSLYIVTAMVIYRYAGPDVASP
-ALSSAGPLMKKVAYGLAIPTVVIAGVVFGHVACKYIYVRIFR-GSAHMHQNSFLAIGSWV
-AIALGVWVVAWVIAESIPVFNELLSLISSLFGSWFSYGLPAIFWLVMNKGRWFSTRSKIC
-LTIVNFFILAFACALCGMGLYVSGKSIHDSSSKASW------------------------
+-------VFSAVLIVMIAVGVQRPWHGGLNATVDTNLYKAFLAVCNIVFSFCRLFLHFSS
+FMDRTNKTAGHVAFFGFMAELRNPRDYPKSLFLLQGIDTCLYIIAAVVIYCYAGDDVTSP
+ALGSASTIVKKVAYGIALPTIIIGGVVNGHVACKYIYVRMWR-HSDRMHKRDLVATGSWV
+LIGLATWIVAWIIAEAIPVFNNLLSLVREVLVV-----ICTMIW-----ERVLIAPSVTA
+FRLF------------PLALFVATR----DPRSIG-------------------------
 ------------------------------------------------------------
 ------------------------------------------------------------
 ------------------------------------------------------------
----------------------------TCKNNAT--------------------------
 ------------------------------------------------------------
 ------------------------------------------------------------
-----------------------------------------------------------TT
->Aspergillus_fischeri_NRRL181|XP_001261692.1
-M-----------------------------------------------------------
 ------------------------------------------------------------
 ------------------------------------------------------------
--------------------------AVSRD---LEA----------PAVVNDP-------
----TAYDATVEKKEYADGTPANDPFGNEECGEVKYRVMSWWQCGTLMVAENISLGILSLP
-SAV---ATLGIVPAVILLLGLSAISWYTGYIMGQFKLRFPQVHSMGDAGELLMGRFGREL
-FGIGQLLFLIFLMASHILTFTVVFNTITNHGTCTIVFGVVGLVVSFIGALPRTMGKVYWM
-SMASCISIVTATVVTMIAIGVQAPEHVHVDATTEVSFQDAFLAVTNIIFAY---------
---------IAHVAFFGFISEMHDPRDFPKSLTMLQVVDTSLYIVTAMVIYRYAGPDVASP
-ALSSAGPVMKKVAYGLAIPTVVIAGVVFGHVACKYIYVRIFR-GSAHMHQNSFLAIGSWV
-AIALSVWVVAWVIAESIPVFNELLSLISSLFGSWFSYGLPAIFWLVMNKGRWFSTRSKIC
-LTIVNFLILAFACALCGMGLYVSGKSIHDSSSKASW------------------------
+>Aspergillus_fischeri_NRRL181|XP_001267441.1
+MGSMLEAG----------------------------------------------------
 ------------------------------------------------------------
 ------------------------------------------------------------
+----------------------SRPAADAE---MDTDR------VHPEAV----------
+-----SDGERDFEKQDSKPEYQDAFGDEEYAEVKYKTLSWCH------GCRDSVTGYSLP
+ASG---GGLGPCP---------------------FKWAYPHIHSMGDAGEVIMGRFGREL
+FGTGQLLLVVFIMASHILTFTVAMNSITDHGTCSIVFGVVGLVISFVLCLPRTLAKVSFL
+SVASFISVFSAVLIVMIAVGVQRPWHGSVNATVDTSLYKAFLAVCNIVFSF---------
+--------SGHVAFFGFMAELKNPRDYPKSLFLLQGIDTCLYIVAAVVIYCYAGDDVTSP
+ALGSASIVVKKVAYGIALPTIIIGGVVNGHVACKYIYVRMWR-HSDRMHKRDLVATGSWV
+LIGLATWIVAWIIAEAIPVFNNLLSLVASLFASWFTYGFSALFWLYLNKGRFFSTPMKTA
+LTILNVVIMGIACCICGLGLYVSGKALHDDPSSASF------------------------
 ------------------------------------------------------------
----------------------------TCKNNAT--------------------------
 ------------------------------------------------------------
 ------------------------------------------------------------
+---------------------------SCANNA---------------------------
 ------------------------------------------------------------
->Aspergillus_niger_CBS_513.88|XP_001401336.1
-M-----------------------------------------------------------
 ------------------------------------------------------------
 ------------------------------------------------------------
-------------------------APTTRD---LEA----------LTVHHDS-------
--DIMADDLAEKKVSANESPPENDPFGNEECGEVKYRVMKWWHCGILMIAENISLGILSLP
-SAV---ATLGIVPSIFLILGLSGISWYTGYVIGQFKLRYPQVHSMGDAGEILFGRIGREI
-LFFGQLLFCIFLMSSHILTFTVLFNTITGHGTCTIVFGVVGLVVSFIGALPRTMGKVYWM
-SLASCTSITVATIVTMVAIAMQAPDHVQVDITTHPSFSTAFLSVTNIVFAF---------
---------IAHVAFFGFASEMEDPRDFPKSLAMLQVTDTTMYIVTAMVIYRYAGPDVASP
-ALSSAGPLMSKVAYGLAIPTVIIAGVVFGHVASKYIYVRVWR-GSPQMHTNSLAAVGSWV
-AIALGVWVIAWIIAESIPVFNDLLSLISSLFGSWFSYGLPAMFWLVMNRGQYTASPRKIF
-LTIVNLVIFGIACAICGLGLYVSGKAIHDSSSSASW------------------------
+>Aspergillus_niger_CBS_513.88|XP_001400898.1
+M--AHPTG----------------------------------------------------
 ------------------------------------------------------------
 ------------------------------------------------------------
+----------------------DKVDSHLN---VQTGQFFQDGREEPYLH----------
+------DAEEKQDEKKGSPIYNDTFGDEEYAEVKYKVLSWWQCGFLMVAETVSLGILSLP
+AVV---ATLGLAPAIVLIVGLGLLATYTGYVIGQFRWRYPHVQNLADAGEILFGSIGREI
+FGIGQLLLVIFIMASHLLTFSVAMNTITEHGTCSIVFGVVGLVICFLLGLPRTSANVSYL
+SVASFISVFSAVMIVMIAVGVERPYKGTLSATVDTSLYEAFLAVCNIVFSF---------
+--------SGHVAFFGFMSELKDHREYPKALCLLQGLDTILYLVTSVVIYIYAGPNVTSP
+ALGSASELVGKVAYGIALPTIIIGGVVNGHVACKYVYVRIFR-HGDRMHSRDLLATGSWV
+GIALGLWIIAWIIAEAIPVFNDLLSLIASLFASWSTFGFSGMFWLYLNKDRLFSSPRKIA
+LTIFNVIIIGIAACICGLGLYVSGRSLHDDANGSSF------------------------
 ------------------------------------------------------------
----------------------------TCANNAST-------------------------
 ------------------------------------------------------------
 ------------------------------------------------------------
+---------------------------SCASNA---------------------------
 ------------------------------------------------------------
->Aspergillus_awamori_IFM_58123|GCB19008.1
-M-----------------------------------------------------------
 ------------------------------------------------------------
 ------------------------------------------------------------
-------------------------APTTRD---LEA----------LAVHHDS-------
--DIMADDLAEKKVSANESPPENDPFGNEECGEVKYRVMKWWHCGILMIAENISLGILSLP
-SAV---ATLGIVPSIFLILGLSGISWYTGYVIGQFKLRYPQVHSMGDAGEILFGRIGREI
-LFFGQLLFCIFLMSSHILTFTVLFNTITGHGTCTIVFGVVGLVVSFIGALPRTMGKVYWM
-SLASCTSITVATIVTMVAIAVQAPDHVQVDITTHPSFSTAFLSVTNIVFAF---------
---------IAHVAFFGFASEMEDPRDFPKSLAMLQVTDTTMYIVTAMVIYRYAGPDVASP
-ALSSAGPLMSKVAYGLAIPTVIIAGVVFGHVASKYIYVRVWR-GSPQMHTNSLAAVGSWV
-AIALGVWVIAWIIAESIPVFNDLLSLISSLFGSWFSYGLPAMFWLVMNRGQYTASPRKIF
-LTIVNLVIFGIACAICGLGLYVSGKAIHDSSSSASW------------------------
+>Aspergillus_awamori_IFM_58123|GCB19337.1
+M--AHPTG----------------------------------------------------
 ------------------------------------------------------------
 ------------------------------------------------------------
+----------------------DKVDSHLN---VQTGQFFQDGREEPYLH----------
+------DAEEKQDEKKGSPIYNDTFGDEEYAEVKYKVLSWWQCGFLMVAETVSLGILSLP
+AVV---ATLGLAPAIVLIVGLGLLATYTGYVIGQFRWRYPHVQNLADAGEILFGSIGREI
+FGIGQLLLVIFIMASHLLTFSVAMNTITEHGTCSIVFGVVGLVICFLLGLPRTSANVSYL
+SVASFISVFSAVMIVMIAVGVERPYKGTLSATVDTSLYEAFLAVCNIVFSF---------
+--------SGHVAFFGFMSELKDHREYPKALCLLQGLDTILYLVTSVVIYIYAGPNVTSP
+ALGSASELVGKVAYGIALPTIIIGGVVNGHVACKYVYVRIFR-HGDRMHSRDLLATGSWV
+GIALGLWIIAWIIAEAIPVFNDLLSLIASLFASWSTFGFSGMFWLYLNKDRLFSSPRKIA
+LTFFNVIIIGIAACICGLGLYVSGRSLHDDANGSSF------------------------
 ------------------------------------------------------------
----------------------------TCANNAST-------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+---------------------------SCASNA---------------------------
 ------------------------------------------------------------
 ------------------------------------------------------------
 ------------------------------------------------------------