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manta-1.3.1
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@ctsa ctsa released this 19 Feb 18:27
· 248 commits to master since this release
v1.3.1
608e8fc

Summary

This is a bugfix update from v1.3.0, notably providing an htslib update to address issues with running manta from alignments in CRAM format.

Changelog

Changed

  • Change default minimum scored SV size from 51 to 50 (MANTA-1321)
    • This change is intended to better align with GIAB SV size range conventions.

Fixed

  • Update htslib to incorporate CRAM file query fix (MANTA-1336/[#109])
    • This is expected to resolve all known issues with manta from alignments in CRAM format.
  • Fix RNA-seq split read count regression introduced by MANTA-1332 in the v1.3.0 release (MANTA-1342)
  • Stop forcing static linking for zlib (STREL-842)
    • This change brings zlib policy in-line with strelka, such that options (i.e. LD_PRELOAD) are available for improved compression performance.

manta-1.3.1.centos6_x86_64.tar.bz2 is a binary distribution for 64-bit linux. This is built on CentOS 6 with all dependencies except glibc statically linked. It is expected to run without modification on most linux distributions.

The manta-1.3.1.release_src.tar.bz2 download is the full source code release. The “Source code” downloads are generated by GitHub and are incomplete as they are missing version numbers and build system changes to improve portability.

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