Prerelease Version 0.6.0-rc1

aa54c1c further small improvements to numerical stability
1d369c0 add additional warp test
f95afbc fix several small indexing bugs
4e30b51 fix edge case bug with small negative coefficients in tmat
69d8c7f fix hdf writer bug and add test for same
85654bf minor output fixes
8c69279 finalize major rework - new matrix assembly routines
282f766 Merge pull request #49 from INSIGNEO/pfire_next
3a4ac4a basis free rework
5c3520f refactor docs, add doxygen via breathe
4a0e090 improve testsuite and docs
20f71e2 improve help formatting
eb5e572 add algorithm documentation
f4ac8c9 Merge pull request #41 from INSIGNEO/develop
45201e4 complete testsuite framework
b7c0202 add html report generation
536773e begin modifying class structure to make full testsuite
6dc55c9 Merge pull request #40 from INSIGNEO/develop
7dad1b5 further output improvements
c767628 Merge pull request #39 from INSIGNEO/develop
822cc23 improve output error handling
e355ca2 Merge pull request #38 from INSIGNEO/develop
74b5b52 try to clean up exceptions more neatly
ee7c7c5 switch to CHKERRXX globally
c64b258 improve exception handling
88a5fb9 remove duplication of configuration arguments

Version 0.5.0

9625917 - make boolean case insensitive
7aa6acb - add 3d masking test
8bee15a - fix shirt mask loading failure
2018a96 - add regression validation
4e46663 - add 2d comparison test - brain
e3664f2 - improve integration testing framework

Prerelease Version 0.5.0-rc3

2dc71bc - fix spurious test failures
c89c038 - merge develop branch, adds masking support
51d2ea2 - hotfix for out of bounds access bug in image loader
a887444 - Add mask support
7206a77 - outline changes

Prerelease Version 0.5.0-rc1

Pre-release for version 0.5.0

Changes:

cad771d - add R^2 to validation tool
180d711 - add pFIRE-ShIRT cross-validation tool
4c91cce - improve config error handling
deaa270 - add FP trapping to condition number calculation
51df059 - add mutual information convergence criterion
9db4dc0 - Update README.md

Version 0.4.0

Fixed nasty bug with indexing on mpi boundaries, causing images to be miswarped.

Added options for saving intermediate images and intermediate maps.

Version 0.3.4

Changes to hdf5 group names. These now have their own configuration keys in registered_h5_group and map_h5_group. This replaces the previous filepath:grouppath syntax.

Version 0.3.3

Improve build reliability on ubuntu systems.
Additional logging outputs

Version 0.3.2

Hotfix release for dcmloader segfault under certain conditions

Version 0.3.1

Small fix to prevent broken spack installs

Release 0.3.0

v0.3.0

fix broken tutorial.rst