v0.1.7.3

What's Changed

• Fixed missing column when parsing dbCAN version >=3 output. Now uses all prediction tool output columns

• Updated requirements. Removed old sklearn requirement and updated to newer scikitlearn requirement

• patch:Add dbcan flexibility by @HobnobMancer in #18

• Update requirements by @HobnobMancer in #19

Full Changelog: v0.1.7...v0.1.7.3

v0.1.7

What's Changed

Add fam seq analysis by @HobnobMancer in #4

• Facilitates automating exploring sequence diversity in CAZy families of interest
• Retrieves protein sequences from NCBI
• Runs DIAMOND or BLAST
• Generates clustermaps of BLAST/DIAMOND output

Annotate cazomes by @HobnobMancer in #5

• Retrieve canonical CAZyme classifications from CAZy using cazy_webscraper
• Automate running dbCAN over a series of protein FASTA files
• Parse dbCAN output
• Generate tab delimited list suitable for use with coinfinder to identify CAZy families that appear together more often than expected by chance and lineage

Package scripts by @HobnobMancer in #6

• Create a single entry point with subcommands

Improve reproduciblity by @HobnobMancer in #7

• Fix bugs
• Improve documentation of functions
• Expand usability - make more tolerant of varying data structures

Add and write documentation, including example commands:

• Doc annotate cazomes by @HobnobMancer in #11
• Doc annotate cazomes by @HobnobMancer in #12
• Doc annotate cazomes by @HobnobMancer in #13

Add unit testing with continuous integration and coverage reports:

• Add explore cli by @HobnobMancer in #14
• Circleci project setup by @HobnobMancer in #16
• Unit tests by @HobnobMancer in #15
• Test exploration by @HobnobMancer in #17

Full Changelog: v0.0.1...v0.1.7

v0.0.2

Add zenodo integration

v0.0.1 - initial release

Initial release

Currently enables the retrieval of genomic assemblies, and annotation of the CAZomes
Add Zenodo intergration

What's Changed

• add retrieving genomes by @HobnobMancer in #1
• add installation by @HobnobMancer in #2
• Annotate cazomes by @HobnobMancer in #3

New Contributors

• @HobnobMancer made their first contribution in #1

Full Changelog: https://github.com/HobnobMancer/cazomevolve/commits/v0.0.1