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Move 8.1.5 to main for autoupdater #1797

Merged
merged 67 commits into from
Apr 8, 2024
Merged

Move 8.1.5 to main for autoupdater #1797

merged 67 commits into from
Apr 8, 2024

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JFriel
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@JFriel JFriel commented Apr 8, 2024

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JFriel and others added 30 commits January 3, 2024 15:46
Bumps [Autoupdater.NET.Official](https://github.com/ravibpatel/AutoUpdater.NET) from 1.8.4 to 1.8.5.
- [Release notes](https://github.com/ravibpatel/AutoUpdater.NET/releases)
- [Commits](ravibpatel/AutoUpdater.NET@v1.8.4...v1.8.5)

---
updated-dependencies:
- dependency-name: Autoupdater.NET.Official
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
* Delete .nuget/packages.config

Remove  hopefully obsolete package list confusing dependency tracking

* Remove .nuget folder

---------

Co-authored-by: James A Sutherland <>
Bumps [shogo82148/actions-setup-perl](https://github.com/shogo82148/actions-setup-perl) from 1.28.0 to 1.29.0.
- [Release notes](https://github.com/shogo82148/actions-setup-perl/releases)
- [Commits](shogo82148/actions-setup-perl@v1.28.0...v1.29.0)

---
updated-dependencies:
- dependency-name: shogo82148/actions-setup-perl
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: James Friel <jfriel001@dundee.ac.uk>
Bumps [CsvHelper](https://github.com/JoshClose/CsvHelper) from 30.0.3 to 30.1.0.
- [Commits](JoshClose/CsvHelper@30.0.3...30.1.0)

---
updated-dependencies:
- dependency-name: CsvHelper
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: James Friel <jfriel001@dundee.ac.uk>
Bumps [SSH.NET](https://github.com/sshnet/SSH.NET) from 2023.0.1 to 2024.0.0.
- [Release notes](https://github.com/sshnet/SSH.NET/releases)
- [Commits](sshnet/SSH.NET@2023.0.1...2024.0.0)

---
updated-dependencies:
- dependency-name: SSH.NET
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Bumps [SixLabors.ImageSharp.Drawing](https://github.com/SixLabors/ImageSharp.Drawing) from 2.1.0 to 2.1.1.
- [Release notes](https://github.com/SixLabors/ImageSharp.Drawing/releases)
- [Commits](SixLabors/ImageSharp.Drawing@v2.1.0...v2.1.1)

---
updated-dependencies:
- dependency-name: SixLabors.ImageSharp.Drawing
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Bumps [MongoDB.Driver](https://github.com/mongodb/mongo-csharp-driver) from 2.23.1 to 2.24.0.
- [Release notes](https://github.com/mongodb/mongo-csharp-driver/releases)
- [Commits](mongodb/mongo-csharp-driver@v2.23.1...v2.24.0)

---
updated-dependencies:
- dependency-name: MongoDB.Driver
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Bumps [NUnit](https://github.com/nunit/nunit) from 4.0.1 to 4.1.0.
- [Release notes](https://github.com/nunit/nunit/releases)
- [Changelog](https://github.com/nunit/nunit/blob/master/CHANGES.md)
- [Commits](nunit/nunit@v4.0.1...4.1.0)

---
updated-dependencies:
- dependency-name: NUnit
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Bumps [FluentFTP](https://github.com/robinrodricks/FluentFTP) from 49.0.1 to 49.0.2.
- [Release notes](https://github.com/robinrodricks/FluentFTP/releases)
- [Changelog](https://github.com/robinrodricks/FluentFTP/blob/master/RELEASES.md)
- [Commits](https://github.com/robinrodricks/FluentFTP/commits)

---
updated-dependencies:
- dependency-name: FluentFTP
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
* centrally managed dependacies

* add directory.project.props file

* fix typo

* fix build

* fix up test

* Whitespace cleanup

* Avoid searching for and reading all csproj files twice

* remove console log

* update dependabot actions

* remove dependabot lower bounds

---------

Co-authored-by: James A Sutherland <>
Bumps [YamlDotNet](https://github.com/aaubry/YamlDotNet) from 15.1.1 to 15.1.2.
- [Release notes](https://github.com/aaubry/YamlDotNet/releases)
- [Commits](aaubry/YamlDotNet@v15.1.1...v15.1.2)

---
updated-dependencies:
- dependency-name: YamlDotNet
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Bumps [coverlet.collector](https://github.com/coverlet-coverage/coverlet) from 6.0.0 to 6.0.1.
- [Release notes](https://github.com/coverlet-coverage/coverlet/releases)
- [Commits](coverlet-coverage/coverlet@v6.0.0...v6.0.1)

---
updated-dependencies:
- dependency-name: coverlet.collector
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* update excel attacher processing ordering
Bumps [SixLabors.ImageSharp](https://github.com/SixLabors/ImageSharp) from 3.1.2 to 3.1.3.
- [Release notes](https://github.com/SixLabors/ImageSharp/releases)
- [Commits](SixLabors/ImageSharp@v3.1.2...v3.1.3)

---
updated-dependencies:
- dependency-name: SixLabors.ImageSharp
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Bumps [SixLabors.ImageSharp.Drawing](https://github.com/SixLabors/ImageSharp.Drawing) from 2.1.1 to 2.1.2.
- [Release notes](https://github.com/SixLabors/ImageSharp.Drawing/releases)
- [Commits](SixLabors/ImageSharp.Drawing@v2.1.1...v2.1.2)

---
updated-dependencies:
- dependency-name: SixLabors.ImageSharp.Drawing
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
dependabot bot and others added 27 commits March 18, 2024 07:45
Bumps [NUnit.Analyzers](https://github.com/nunit/nunit.analyzers) from 4.0.1 to 4.1.0.
- [Release notes](https://github.com/nunit/nunit.analyzers/releases)
- [Changelog](https://github.com/nunit/nunit.analyzers/blob/master/CHANGES.txt)
- [Commits](nunit/nunit.analyzers@4.0.1...4.1.0)

---
updated-dependencies:
- dependency-name: NUnit.Analyzers
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Bumps [HIC.BadMedicine](https://github.com/HicServices/BadMedicine) from 1.2.0 to 1.2.1.
- [Release notes](https://github.com/HicServices/BadMedicine/releases)
- [Changelog](https://github.com/HicServices/BadMedicine/blob/develop/CHANGELOG.md)
- [Commits](HicServices/SynthEHR@v1.2.0...v1.2.1)

---
updated-dependencies:
- dependency-name: HIC.BadMedicine
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
* bring notification to front

* add top most
Bumps [NPOI](https://github.com/nissl-lab/npoi) from 2.6.2 to 2.7.0.
- [Release notes](https://github.com/nissl-lab/npoi/releases)
- [Commits](https://github.com/nissl-lab/npoi/commits)

---
updated-dependencies:
- dependency-name: NPOI
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* fix value to string conversion

* Update ExcelDataFlowSource.cs
* extractions remember pipeline

* update changelog

* reorder testing

* fix test

* revert test

* add order to test

* updates from codeql

* tidy up code

* Update ExecuteExtractionUI.cs
* add 50min timeout

* interim

* add optional timeout

* add changelog

* tidy up from codeql

* update
* improve bak file usage

* add documentation stub

* add docs

* tidy up code

* bump sixLabors

* update to ui

* restore files

* improve documentation

* add using statement
…olumn

Task/RDMP-154 Cohort Importer respects remote server ID
* start of msi upgrade

* remove wix

* update build steps

* tidy up

* restore file

* update sln
* basic db objects

* fix typo

* working db linkage

* working build

* add sql update

* update sql

* update tests

* update sql

* update create sql

* update sql

* update sql

* update class

* fix extra space

* attempt to fix tests

* remove linkage

* fix typo

* add test case

* attempt image fix

* fix up image

* add missing file

* add changelog

* interim

* interim

* tidy up code

* fix build

* icons

* rename icon file (#1755)

* working icon

* update create sql

* update patch

* add patch

* working patches

* add basic tests

* tidy up code

* add go

* attempt to fix patch

* tidy up code

* remove true equal true check

* tidy up from review

* update migration

* remove dupe file (#1774)

* fix build

* interim sql

* update patch

* fix sql patch

* update patch id

* update patch id

* fix bad merge

* tidy up code

* tidy up code

---------

Co-authored-by: James A Sutherland <j.a.sutherland@dundee.ac.uk>
…switch

Task/RDMP-160 Fix Bad Logic Check
* add release date

* update changelog
* disable tag check

* add sgen

* revert bad fix

* nudge deps

* fix duplicate deps

* drop dep

* fix build
Comment on lines +179 to +186
if (!string.IsNullOrWhiteSpace(Timeout) && int.TryParse(Timeout, out var _timeout))
{
builder["Timeout"] = _timeout;
}
else
{
builder["Timeout"] = 30000;
}

Check notice

Code scanning / CodeQL

Missed ternary opportunity Note

Both branches of this 'if' statement write to the same variable - consider using '?' to express intent better.
@JFriel JFriel merged commit 8460816 into main Apr 8, 2024
5 checks passed
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4 participants