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Some fixes from Kieran #257

Some fixes from Kieran

Some fixes from Kieran #257

Workflow file for this run

name: Run python tests
on:
push:
branches:
- master
- dev
pull_request:
branches:
- master
jobs:
build:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v2
- name: Install python3
uses: actions/setup-python@v1
with:
python-version: 3.8
- name: Install dependancies
run: |
python -m pip install --upgrade pip
pip install wheel
sudo apt-get install python3-pygit2
pip install -r requirements.txt
pip install pytest
pip install pytest-cov
- name: Clone submodules
run: git submodule update --init --recursive
- name: Run tests with pytest
run: pytest --cov=jet_tools test/