Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Feb 2021 Error Fixes and New Mods #56

Merged
merged 21 commits into from
Mar 10, 2021
Merged

Feb 2021 Error Fixes and New Mods #56

Changes from 1 commit
Commits
Show all changes
21 commits
Select commit Hold shift + click to select a range
379bdef
Updates MOD:01914
pmt706 Feb 10, 2021
2e89758
Cleanup of README and Adding in OWL Format
pmt706 Feb 10, 2021
ba503ef
Adding in two new mods from UniProt (PubMed 22504181)
pmt706 Feb 10, 2021
295cc18
Adding in AMP-Serine
pmt706 Feb 11, 2021
fca44ac
Adding in S-methylbutanedioic acid-L-cysteine
pmt706 Feb 11, 2021
828e18b
Adding HIB Lysine
pmt706 Feb 11, 2021
1b62f6a
Adding in betahydroxybutyryl lysine
pmt706 Feb 11, 2021
8485344
Adding in Glutaryl Lysine
pmt706 Feb 11, 2021
9d7bc5d
Updating Carbamoyl Lysine
pmt706 Feb 11, 2021
9559540
Adding methyl-d-asparagine
pmt706 Feb 11, 2021
6d06100
Fix MOD:00241
pmt706 Feb 11, 2021
7ccf523
Updating Date/Time/Version and adding in Geranylgeranyl L cysteine me…
pmt706 Mar 3, 2021
5a68a42
Removing Erroneous duplicate
pmt706 Mar 3, 2021
c454b0d
Syntax Error Fix
pmt706 Mar 10, 2021
327f7ac
Fixes MOD:02096
pmt706 Mar 10, 2021
5f93607
Fixing MOD:02094
pmt706 Mar 10, 2021
4f9a14a
Fixes MOD:02092
pmt706 Mar 10, 2021
b4c1f6a
Fixes MOD:02090 and MOD:02091
pmt706 Mar 10, 2021
5cdc06b
Updating Readme.md to indicate primacy of obo
pmt706 Mar 10, 2021
c637ddd
Fixes to MOD:01914
pmt706 Mar 10, 2021
8f7cc5d
Updating OWL for PR 56
pmt706 Mar 10, 2021
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
15 changes: 12 additions & 3 deletions PSI-MOD.obo
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -5299,6 +5299,7 @@ xref: MassAvg: "114.10"
xref: MassMono: "114.042927"
xref: Origin: "N"
xref: Source: "natural"
xref: Source: "natural"
xref: TermSpec: "none"
xref: UniProt: "PTM-0115"
is_a: MOD:00664 ! stereoisomerized residue
Expand Down Expand Up @@ -40676,8 +40677,8 @@ name: crosslinked D-asparagine residue
def: "A protein modification that contains an D-asparagine residue crosslinked to one or more amino acid residues." [PubMed:18688235]
subset: PSI-MOD-slim
synonym: "XlnkDAsn" EXACT PSI-MOD-label []
xref: Origin: "N"
is_a: MOD:00203 ! D-asparagine
xref: Origin: "MOD:00203"
is_a: MOD:02097 ! modified D-asparagine residue

[Term]
id: MOD:02061
Expand Down Expand Up @@ -41152,9 +41153,17 @@ xref: UniProt: "PTM-0691"
is_a: MOD:00599 ! monomethylated residue
is_a: MOD:00602 ! N-methylated residue
is_a: MOD:00673 ! methylated asparagine
is_a: MOD:00203 ! D-asparagine
is_a: MOD:02097 ! modified D-asparagine residue
is_a: MOD:00894 ! residues isobaric at 128.058578 Da

[Term]
id: MOD:02097
name: modified D-asparagine residue
def: "A protein modification that modifies a D-asparagine residue." [PubMed:18688235]
subset: PSI-MOD-slim
synonym: "ModDAsn" EXACT PSI-MOD-label []
is_a: MOD:00203 ! D-asparagine
pmt706 marked this conversation as resolved.
Show resolved Hide resolved

[Typedef]
id: contains
name: contains
Expand Down