This platform facilitates the rapid development and evaluation of any segmentation algorithm in a transparent and reproducible fashion. An open-source, flexible, plug-and-play inline CMR segmentation platform will enable rapid testing and evaluation of new segmentation and analysis algorithms.
The code in this repository is broken up into two implementations:
-
Segmentation Only: The code for deploying the segmentation model (CarSON) only is located the
fire_deployment
directory. It contains the model used to segment a SAX cine and the necessary dependencies. It expects to take in fully reconstructed cine images as input. -
Reconstruction and Segmentation: The code for deploying the resolution enhancement generative adversarial inline neural network (REGAIN) for accelerated cardiac cine combined with the segmentation model (CarSON) is located in the
regain_carson
directory. It expects to take undersampled k-space data as input.