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Merge pull request #50 from HERA-Team/clean-gpu
Updated vis_gpu API to match vis_cpu
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,64 @@ | ||
| name: Run Notebooks | ||
|
|
||
| # Test on all pushes, except when the push is literally just a tag (because we | ||
| # tag automatically via CI, and therefore there's no extra code in that push). | ||
| # Also, only test on pull requests into master/dev. | ||
| on: | ||
| push: | ||
| tags-ignore: | ||
| - 'v*' | ||
| pull_request: | ||
| branches: | ||
| - 'main' | ||
|
|
||
| jobs: | ||
| notebooks: | ||
| name: Running Docs Notebooks | ||
| runs-on: ubuntu-latest | ||
| defaults: | ||
| run: | ||
| # Adding -l {0} ensures conda can be found properly in each step | ||
| shell: bash -l {0} | ||
| steps: | ||
| - uses: actions/checkout@main | ||
| with: | ||
| fetch-depth: 1 | ||
|
|
||
| - name: Cache conda | ||
| uses: actions/cache@v2 | ||
| env: | ||
| # Increase this value to reset cache if ci/test-env.yml has not changed | ||
| CACHE_NUMBER: 0 | ||
| with: | ||
| path: ~/conda_pkgs_dir | ||
| key: | ||
| ${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{ matrix.python-version }}-${{ hashFiles('ci/test-env.yml', 'setup.cfg') }} | ||
|
|
||
| - name: Setup Miniconda | ||
| uses: conda-incubator/setup-miniconda@v2.1.1 | ||
| with: | ||
| # auto-update-conda: true | ||
| miniconda-version: "latest" | ||
| python-version: '3.10' | ||
| environment-file: ci/notebook-env.yml | ||
| activate-environment: viscpu | ||
| channels: conda-forge,defaults | ||
| channel-priority: strict | ||
| use-only-tar-bz2: true | ||
|
|
||
| - name: Conda Info | ||
| run: | | ||
| conda info -a | ||
| conda list | ||
| - name: Install | ||
| run: | | ||
| echo $(which pip) | ||
| pip install .[test] | ||
| - name: Install ipykernel | ||
| run: python -m ipykernel install --user --name viscpu --display-name "viscpu" | ||
|
|
||
| - name: Run Notebooks | ||
| run: | | ||
| papermill -k viscpu docs/tutorials/vis_cpu_tutorial.ipynb tmp.ipynb |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,82 @@ | ||
| name: GPU Tests | ||
|
|
||
| # Test on all pushes, except when the push is literally just a tag (because we | ||
| # tag automatically via CI, and therefore there's no extra code in that push). | ||
| # Also, only test on pull requests into master/dev. | ||
| on: | ||
| push: | ||
| tags-ignore: | ||
| - 'v*' | ||
| pull_request: | ||
| branches: | ||
| - 'main' | ||
|
|
||
| jobs: | ||
| tests: | ||
| env: | ||
| ENV_NAME: tests | ||
| PYTHON: "3.10" | ||
| OS: Ubuntu | ||
| name: Self-Hosted Tests (GPU) | ||
| runs-on: [self-hosted, gpu] | ||
| defaults: | ||
| run: | ||
| # Adding -l {0} ensures conda can be found properly in each step | ||
| shell: bash -l {0} | ||
| steps: | ||
| - name: Add Home to PATH | ||
| run: | | ||
| echo "/home/locoadmin/bin" >> $GITHUB_PATH | ||
| echo "/usr/local/cuda/bin" >> $GITHUB_PATH | ||
| echo "LD_LIBRARY_PATH=/usr/lib/wsl/lib:$LD_LIBRARY_PATH" >> $GITHUB_ENV | ||
| - uses: actions/checkout@main | ||
| with: | ||
| fetch-depth: 0 | ||
|
|
||
| - name: Cache conda | ||
| uses: actions/cache@v2 | ||
| env: | ||
| # Increase this value to reset cache if ci/test-env.yml has not changed | ||
| CACHE_NUMBER: 0 | ||
| with: | ||
| path: ~/conda_pkgs_dir | ||
| key: | ||
| ${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{ env.PYTHON }}-${{ hashFiles('ci/test-env.yml', 'setup.cfg') }} | ||
|
|
||
| - name: Setup Miniconda | ||
| uses: conda-incubator/setup-miniconda@v2.1.1 | ||
| with: | ||
| # auto-update-conda: true | ||
| miniconda-version: "latest" | ||
| python-version: ${{ env.PYTHON }} | ||
| environment-file: ci/test-env.yml | ||
| activate-environment: tests | ||
| channels: conda-forge,defaults | ||
| channel-priority: strict | ||
| use-only-tar-bz2: true | ||
|
|
||
| - name: Conda Info | ||
| run: | | ||
| conda info -a | ||
| conda list | ||
| PYVER=`python -c "import sys; print('{:d}.{:d}'.format(sys.version_info.major, sys.version_info.minor))"` | ||
| if [[ $PYVER != $PYTHON ]]; then | ||
| exit 1; | ||
| fi | ||
| - name: Install | ||
| run: | | ||
| echo $(which pip) | ||
| pip install .[test,gpu] | ||
| - name: Run Tests | ||
| run: | | ||
| python -m pytest --cov=vis_cpu --cov-config=.coveragerc --cov-report xml:./coverage.xml --durations=25 --log-cli-level=DEBUG | ||
| - uses: codecov/codecov-action@v2 | ||
| if: success() | ||
| with: | ||
| fail_ci_if_error: true | ||
| verbose: true | ||
| file: ./coverage.xml |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,23 @@ | ||
| name: viscpu | ||
| channels: | ||
| - conda-forge | ||
| - defaults | ||
| dependencies: | ||
| - mpi4py>=3.0 # Required here so that we get | ||
| - astropy>=4 | ||
| - numpy>=1.20 | ||
| - scipy>=1.6 | ||
| - pip>=21.1 | ||
| - pytest>=6.2.4 | ||
| - pytest-cov>=2.11.1 | ||
| - matplotlib>=3.3.4 | ||
| - ipython>=7.22 | ||
| - h5py>=3.2 | ||
| - ffmpeg | ||
| - pyuvdata # For testing when using UVBeam object | ||
| - jupyter | ||
| - ipykernel | ||
| - papermill | ||
| - pip: | ||
| - pyuvsim[sim]>=1.2 | ||
| - pyradiosky>=0.1.1 |
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