ImmuCellAI 2.0 is an advanced bulk transcriptome deconvolution tool that accurately infers the proportions of a comprehensive range of immune cell types, including rare subsets, from bulk RNA-seq data.
The ImmuCellAI 2.0 Website is a valuable online resource for immunology research, supporting the estimation of immune cell abundance across 9 major immune cell types and their corresponding 53 minor subtypes. Access it here: https://guolab.wchscu.cn/immucellai/
pip install immucellai2
ImmuCellAI 2.0 expects a TPM matrix as input and can be implemented with only two lines of code in Python.
import immucellai2
reference_data = immucellai2.load_tumor_reference_data()
result = immucellai2.run_ImmuCellAI2(
reference_file=reference_data,
sample_file=<file_path>, # User-defined
output_file=<file_path>, # User-defined
thread_num=8
)