·
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since this release
* Added means to import INDELs from PLINK data, alleles encoded as I and D ... the workaround to make it htsjdk compatible is turning I into NN and D in to N * Generalizing support for I and D alleles * add function to check if the user can edit calls * Exporting alleles of INDELs with unknown sequence as I/D for all individual-oriented formats * Export optim (#78) * Implemented async exports from temp collections * POM dependency upgrade * Parallelized export functional for variant-oriented formats * Added means to write variant-list files as chunks when exporting * Minor changes * Individual-oriented exports now working in parallel * Minor change * Added mean to specify a location for export extraction files * Added mean to specify a location for export extraction files + fixed outputstream flush / close * All seems to be working fine * Minor changes * insertStep method in ProgressIndicator adds step at next position * Added safelyGetKnownAlleles() method which allows to fix incomplete known allele lists in VRD records * Replacing dots with underscores in metadata field names This used to cause trouble in the JSON document structure * Made taxon update immediately accounted for * add listReadableDbs in AbstractTokenManager * POM version update * Filter export data on project IDs if several projects in DB (faster export!) * Added some debug facility to GroupedExecutor * Improved debug info for GroupedExecutor * Minor change * Fixed chunk count problem with IGV exports * Minor changes * Minor changes * Moved VisualizationService class from Gigwa2ServiceImpl to Mgdb2Export * Made readToken method static --------- Co-authored-by: Alice Boizet <alice.boizet@cirad.fr>