remove max_depth modification

Griffan · Oct 1, 2023 · 9cbc265 · 9cbc265
1 parent 7e7172c
commit 9cbc265
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Showing 5 changed files with 7 additions and 8 deletions.
diff --git a/CMakeLists.txt b/CMakeLists.txt
@@ -1,4 +1,4 @@
-cmake_minimum_required(VERSION 2.8.4)
+cmake_minimum_required(VERSION 2.8.12)
 project(VerifyBamID)
 
 set(CMAKE_RUNTIME_OUTPUT_DIRECTORY "${CMAKE_CURRENT_SOURCE_DIR}/bin")

diff --git a/SimplePileupViewer.cpp b/SimplePileupViewer.cpp
@@ -368,10 +368,9 @@ int SimplePileupViewer::SimplePileup(mplp_conf_t *conf, int n, char **fn) {
     max_depth = conf->max_depth;
     if (max_depth * sm->n > 1 << 20)
         fprintf(stderr, "[%s] Max depth is above 1M. Potential memory hog!\n", __func__);
-    if (max_depth * sm->n < 8000) {
-        max_depth = 8000 / sm->n;
-        fprintf(stderr, "[%s] Set max per-file depth to %d\n", __func__, max_depth);
-    }
+
+    fprintf(stderr, "[%s] Set max per-file depth to %d\n", __func__, max_depth);
+
     max_indel_depth = conf->max_indel_depth * sm->n;
     bam_mplp_set_maxcnt(iter, max_depth);
     bcf1_t *bcf_rec = bcf_init1();

diff --git a/libVcf/CMakeLists.txt b/libVcf/CMakeLists.txt
@@ -1,4 +1,4 @@
-cmake_minimum_required(VERSION 2.8)
+cmake_minimum_required(VERSION 2.8.12)
 project(libVcf)
 
 file(GLOB SOURCE_FILES

diff --git a/samtools/CMakeLists.txt b/samtools/CMakeLists.txt
@@ -1,4 +1,4 @@
-cmake_minimum_required(VERSION 2.8)
+cmake_minimum_required(VERSION 2.8.12)
 project(samtools)
 
 file(GLOB SOURCE_FILES *.c)

diff --git a/statgen/CMakeLists.txt b/statgen/CMakeLists.txt
@@ -1,4 +1,4 @@
-cmake_minimum_required(VERSION 2.8)
+cmake_minimum_required(VERSION 2.8.12)
 project(statgen)
 
 file(GLOB CXX_SOURCE_FILES *.cpp)