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@GreshamLab

The Gresham Lab at the NYU Center for Genomics and System Biology

Github Organization for all Gresham Lab Code

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  1. RNAseq RNAseq Public

    The Gresham Lab RNAseq pipeline

    Python 2

  2. bartools bartools Public

    tools for analyzing barseq data

    R 1

  3. labtools labtools Public

    useful R functions for data analysis

    R 1 1

  4. RATE_seq RATE_seq Public

    Forked from far279/RATE_seq

    R 1

  5. trumiseq trumiseq Public

    Analysis scripts for TrUMIseq adaptors

    Perl

  6. flowtools flowtools Public

    tools for analyzing flow cytometry data in the Gresham Lab

    R 1

Repositories

Showing 10 of 30 repositories
  • sc_self_supervised Public

    Self Supervised Tools for Single Cell Data

    GreshamLab/sc_self_supervised’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Aug 20, 2024
  • CIVR_HRP_Day0 Public

    Code for Forst et al., 2022

    GreshamLab/CIVR_HRP_Day0’s past year of commit activity
    R 0 0 1 0 Updated Aug 13, 2024
  • supirfactor-dynamical Public

    Build dynamical deep models for transcriptional biophysics

    GreshamLab/supirfactor-dynamical’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Aug 2, 2024
  • SingleCell_cerevisiae Public

    Single cell RNA-sequencing on S. cerevisiae

    GreshamLab/SingleCell_cerevisiae’s past year of commit activity
    R 1 MIT 0 0 0 Updated Jul 26, 2024
  • adaptive_gene_expression Public Forked from pspealman/adaptive_gene_expression

    A collection of code used in the analysis of "Multilevel gene expression changes in lineages containing adaptive copy number variants"

    GreshamLab/adaptive_gene_expression’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Jun 26, 2024
  • jtb_2023_code Public
    GreshamLab/jtb_2023_code’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Jun 17, 2024
  • polyadenylation_cerevisiae Public

    Polyadenylation project on S. cerevisiae

    GreshamLab/polyadenylation_cerevisiae’s past year of commit activity
    Shell 1 MIT 0 0 0 Updated Mar 27, 2024
  • vivaldi Public

    An R package for studying viral genetic diversity using vcf files

    GreshamLab/vivaldi’s past year of commit activity
    R 3 1 0 0 Updated Feb 15, 2024
  • ferret-host-obesity Public

    R analyses associated with "Host obesity impacts genetic variation in influenza A viral populations"

    GreshamLab/ferret-host-obesity’s past year of commit activity
    R 0 0 0 0 Updated Jul 12, 2023
  • cnvflow Public

    workflow using CytoexploreR to analyze flow data from Cytek for CNV detection

    GreshamLab/cnvflow’s past year of commit activity
    HTML 0 MIT 0 0 0 Updated Nov 30, 2022
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