Add message to point to Vierstra website

#1364 (reply in thread)
GreenleafLab · May 6, 2022 · f2d5d05 · f2d5d05
1 parent b9ee266
commit f2d5d05
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/R/AnnotationPeaks.R b/R/AnnotationPeaks.R
@@ -448,8 +448,10 @@ addMotifAnnotations <- function(
   }else if(tolower(motifSet)=="vierstra"){
     if(tolower(collection)=="individual"){
       url = "https://jeffgranja.s3.amazonaws.com/ArchR/Annotations/Vierstra_Individual_Motifs.rds"
+      message("Using Vierstra v1.0 motifs. See https://www.vierstra.org/resources/motif_clustering for more details.")
     } else if(tolower(collection == "archetype")){
       url = "https://jeffgranja.s3.amazonaws.com/ArchR/Annotations/Vierstra_Archetype_Motifs_v2.1.rds"
+      message("Using Vierstra v2.1beta motifs. See https://resources.altius.org/~jvierstra/projects/motif-clustering-v2.1beta/ for more details.")
     } else {
       stop(paste0("Error! collection ", collection, " not recognized for motifSet ",motifSet,
         ". Accepted values are 'individual' and 'archetype'"))