Test INSPECT, DEID & REID #719
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Test INSPECT, DEID & REID | |
| on: | |
| pull_request: | |
| types: [ opened, reopened, synchronize ] | |
| schedule: | |
| - cron: '30 9 * * *' | |
| workflow_dispatch: | |
| env: | |
| PROJECT_ID: "dlp-dataflow-deid-ci-392604" | |
| DATASET_ID: "demo_dataset" | |
| PARQUET_DATASET_ID: "parquet_results" | |
| ORC_DATASET_ID: "orc_results" | |
| REGION: "us-central1" | |
| GCS_BUCKET: "dlp-dataflow-deid-ci-392604-demo-data" | |
| GCS_NOTIFICATION_TOPIC: "projects/dlp-dataflow-deid-ci-392604/topics/dlp-dataflow-deid-ci-gcs-notification-topic" | |
| SAMPLE_DATA_DIR: "sample_data_for_ci_workflow" | |
| INPUT_FILE_NAME: "tiny_csv" | |
| INPUT_STREAMING_WRITE_FILE_NAME: "streaming_write" | |
| INPUT_PARQUET_FILE_NAME: "tiny_parquet" | |
| INPUT_ORC_FILE_NAME: "tiny_orc" | |
| INSPECT_TEMPLATE_PATH: "projects/dlp-dataflow-deid-ci-392604/locations/global/inspectTemplates/dlp-demo-inspect-latest-1689137435622" | |
| DEID_TEMPLATE_PATH: "projects/dlp-dataflow-deid-ci-392604/locations/global/deidentifyTemplates/dlp-demo-deid-latest-1689137435622" | |
| PARQUET_DEID_TEMPLATE_PATH: "projects/dlp-dataflow-deid-ci-392604/locations/global/deidentifyTemplates/parquet-dlp-demo-deid-latest-1689137435622" | |
| REID_TEMPLATE_PATH: "projects/dlp-dataflow-deid-ci-392604/locations/global/deidentifyTemplates/dlp-demo-reid-latest-1689137435622" | |
| SERVICE_ACCOUNT_EMAIL: "demo-service-account@dlp-dataflow-deid-ci-392604.iam.gserviceaccount.com" | |
| PUBSUB_TOPIC_NAME: "demo-topic" | |
| INSPECTION_TABLE_ID: "dlp_inspection_result" | |
| NUM_INSPECTION_RECORDS_THRESHOLD: "50" | |
| PARQUET_INSPECTION_RECORDS_THRESHOLD: "30" | |
| ORC_INSPECTION_RECORDS_THRESHOLD: "60" | |
| REIDENTIFICATION_QUERY_FILE: "reid_query.sql" | |
| OUTPUT_GCS_BUCKET: "deidentified_files" | |
| ORC_DEID_RECORDS_COUNT: "20" | |
| jobs: | |
| build-and-unit-test: | |
| permissions: | |
| pull-requests: write | |
| contents: write | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Setup Java | |
| uses: actions/setup-java@v3 | |
| with: | |
| distribution: 'zulu' | |
| java-version: 17 | |
| - name: Setup Gradle | |
| uses: gradle/gradle-build-action@v2 | |
| - name: Run gradle build | |
| run: ./gradlew clean build | |
| - name: Upload coverage reports to Codecov | |
| uses: codecov/codecov-action@v3 | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| generate-uuid: | |
| needs: build-and-unit-test | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 5 | |
| outputs: | |
| output1: ${{ steps.gen-uuid.outputs.uuid }} | |
| output2: ${{ steps.gen-uuid.outputs.inspect_job_name }} | |
| output3: ${{ steps.gen-uuid.outputs.deid_job_name }} | |
| output4: ${{ steps.gen-uuid.outputs.reid_job_name }} | |
| output5: ${{ steps.gen-uuid.outputs.dataset_id }} | |
| output6: ${{ steps.gen-uuid.outputs.parquet_inspect_job_name }} | |
| output7: ${{ steps.gen-uuid.outputs.parquet_deid_job_name }} | |
| output8: ${{ steps.gen-uuid.outputs.parquet_dataset_id }} | |
| output9: ${{ steps.gen-uuid.outputs.output_gcs_bucket }} | |
| output10: ${{ steps.gen-uuid.outputs.orc_inspect_job_name }} | |
| output11: ${{ steps.gen-uuid.outputs.orc_deid_bq_job_name }} | |
| output12: ${{ steps.gen-uuid.outputs.orc_dataset_id }} | |
| output13: ${{ steps.gen-uuid.outputs.orc_deid_gcs_job_name }} | |
| steps: | |
| - name: Generate UUID for workflow | |
| id: gen-uuid | |
| run: | | |
| new_uuid=$(uuidgen) | |
| modified_uuid=$(echo "$new_uuid" | tr '-' '_') | |
| echo "uuid=$new_uuid" >> "$GITHUB_OUTPUT" | |
| echo "inspect_job_name=inspect-$new_uuid" >> "$GITHUB_OUTPUT" | |
| echo "deid_job_name=deid-$new_uuid" >> "$GITHUB_OUTPUT" | |
| echo "reid_job_name=reid-$new_uuid" >> "$GITHUB_OUTPUT" | |
| echo "dataset_id=${{ env.DATASET_ID }}_$modified_uuid" >> "$GITHUB_OUTPUT" | |
| echo "parquet_inspect_job_name=parquet-inspect-$new_uuid" >> "$GITHUB_OUTPUT" | |
| echo "parquet_deid_job_name=parquet-deid-$new_uuid" >> "$GITHUB_OUTPUT" | |
| echo "parquet_dataset_id=${{ env.PARQUET_DATASET_ID }}_$modified_uuid" >> "$GITHUB_OUTPUT" | |
| echo "output_gcs_bucket=${{ env.OUTPUT_GCS_BUCKET }}_$modified_uuid" >> "$GITHUB_OUTPUT" | |
| echo "orc_inspect_job_name=orc-inspect-$new_uuid" >> "$GITHUB_OUTPUT" | |
| echo "orc_deid_bq_job_name=orc-deid-bq-$new_uuid" >> "$GITHUB_OUTPUT" | |
| echo "orc_dataset_id=${{ env.ORC_DATASET_ID }}_$modified_uuid" >> "$GITHUB_OUTPUT" | |
| echo "orc_deid_gcs_job_name=orc-deid-gcs-$new_uuid" >> "$GITHUB_OUTPUT" | |
| create-dataset: | |
| needs: | |
| - generate-uuid | |
| runs-on: | |
| - self-hosted | |
| - CI | |
| timeout-minutes: 5 | |
| steps: | |
| - name: Create BQ dataset | |
| env: | |
| DATASET_ID: ${{ needs.generate-uuid.outputs.output5 }} | |
| PARQUET_DATASET_ID: ${{ needs.generate-uuid.outputs.output8 }} | |
| ORC_DATASET_ID: ${{ needs.generate-uuid.outputs.output12 }} | |
| run: | | |
| bq --location=US mk -d --description "GitHub CI workflow dataset" ${{ env.DATASET_ID }} | |
| bq --location=US mk -d --description "GitHub CI workflow dataset to store parquet results" ${{ env.PARQUET_DATASET_ID }} | |
| bq --location=US mk -d --description "GitHub CI workflow dataset to store orc results" ${{ env.ORC_DATASET_ID }} | |
| create-output-bucket: | |
| needs: | |
| - generate-uuid | |
| runs-on: | |
| - self-hosted | |
| - CI | |
| timeout-minutes: 5 | |
| steps: | |
| - name: Create Output GCS Bucket | |
| env: | |
| OUTPUT_GCS_BUCKET: ${{ needs.generate-uuid.outputs.output9 }} | |
| run: | | |
| gcloud storage buckets create gs://${{ env.OUTPUT_GCS_BUCKET }} --location=${{env.REGION}} | |
| inspection: | |
| needs: | |
| - generate-uuid | |
| - create-dataset | |
| runs-on: | |
| - self-hosted | |
| - CI | |
| timeout-minutes: 30 | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Setup Java | |
| uses: actions/setup-java@v3 | |
| with: | |
| distribution: 'zulu' | |
| java-version: 17 | |
| - name: Setup Gradle | |
| uses: gradle/gradle-build-action@v2 | |
| - name: Run DLP Pipeline | |
| env: | |
| INSPECT_JOB_NAME: ${{ needs.generate-uuid.outputs.output2 }} | |
| DATASET_ID: ${{ needs.generate-uuid.outputs.output5 }} | |
| run: | | |
| ./gradlew run -DmainClass=com.google.swarm.tokenization.DLPTextToBigQueryStreamingV2 -Pargs=" \ | |
| --streaming --enableStreamingEngine \ | |
| --region=${{env.REGION}} \ | |
| --project=${{env.PROJECT_ID}} \ | |
| --tempLocation=gs://${{env.GCS_BUCKET}}/temp \ | |
| --numWorkers=1 \ | |
| --maxNumWorkers=2 \ | |
| --runner=DataflowRunner \ | |
| --filePattern=gs://${{env.GCS_BUCKET}}/${{env.INPUT_FILE_NAME}}*.csv \ | |
| --dataset=${{env.DATASET_ID}} \ | |
| --workerMachineType=n1-highmem-4 \ | |
| --inspectTemplateName=${{env.INSPECT_TEMPLATE_PATH}} \ | |
| --batchSize=200000 \ | |
| --DLPMethod=INSPECT \ | |
| --serviceAccount=${{env.SERVICE_ACCOUNT_EMAIL}} \ | |
| --jobName=${{env.INSPECT_JOB_NAME}} \ | |
| --gcsNotificationTopic=${{env.GCS_NOTIFICATION_TOPIC}}" | |
| sleep 30s | |
| gsutil cp gs://${{env.GCS_BUCKET}}/temp/csv/tiny_csv_pub_sub.csv gs://${{env.GCS_BUCKET}} | |
| - name: Verify BQ table | |
| env: | |
| DATASET_ID: ${{ needs.generate-uuid.outputs.output5 }} | |
| run: | | |
| not_verified=true | |
| table_count=0 | |
| while $not_verified; do | |
| table_count=$(($(bq query --use_legacy_sql=false --format csv 'SELECT * FROM `${{env.PROJECT_ID}}.${{env.DATASET_ID}}`.__TABLES__ WHERE table_id="${{env.INSPECTION_TABLE_ID}}"' | wc -l ) -1)) | |
| if [[ "$table_count" == "1" ]]; then | |
| echo "PASSED"; | |
| not_verified=false; | |
| else | |
| sleep 30s | |
| fi | |
| echo "Got number of tables in BQ with id ${{env.INSPECTION_TABLE_ID}}: $table_count ." | |
| done | |
| echo "Verified number of tables in BQ with id ${{env.INSPECTION_TABLE_ID}}: $table_count ." | |
| - name: Verify distinct rows | |
| env: | |
| DATASET_ID: ${{ needs.generate-uuid.outputs.output5 }} | |
| run: | | |
| not_verified=true | |
| row_count=0 | |
| while $not_verified; do | |
| row_count_json=$(bq query --use_legacy_sql=false --format json 'SELECT COUNT(*) FROM `${{env.PROJECT_ID}}.${{env.DATASET_ID}}.${{env.INSPECTION_TABLE_ID}}`') | |
| row_count=$(echo "$row_count_json" | jq -r '.[].f0_') | |
| if [[ "$row_count" -gt ${{env.NUM_INSPECTION_RECORDS_THRESHOLD}} ]]; then | |
| echo "PASSED"; | |
| not_verified=false; | |
| else | |
| sleep 30s | |
| fi | |
| echo "Got number of rows in ${{env.INSPECTION_TABLE_ID}}: $row_count." | |
| done | |
| echo "Verified number of rows in ${{env.INSPECTION_TABLE_ID}}: $row_count." | |
| # Inspect only existing parquet files | |
| inspect-parquet-data: | |
| needs: | |
| - generate-uuid | |
| - create-dataset | |
| runs-on: | |
| - self-hosted | |
| - CI | |
| timeout-minutes: 30 | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Setup Java | |
| uses: actions/setup-java@v3 | |
| with: | |
| distribution: 'zulu' | |
| java-version: 17 | |
| - name: Setup Gradle | |
| uses: gradle/gradle-build-action@v2 | |
| - name: Run DLP Pipeline | |
| env: | |
| PARQUET_INSPECT_JOB_NAME: ${{ needs.generate-uuid.outputs.output6 }} | |
| PARQUET_DATASET_ID: ${{ needs.generate-uuid.outputs.output8 }} | |
| run: | | |
| ./gradlew run -DmainClass=com.google.swarm.tokenization.DLPTextToBigQueryStreamingV2 -Pargs=" \ | |
| --region=${{env.REGION}} \ | |
| --project=${{env.PROJECT_ID}} \ | |
| --tempLocation=gs://${{env.GCS_BUCKET}}/temp \ | |
| --numWorkers=1 --maxNumWorkers=2 \ | |
| --runner=DataflowRunner \ | |
| --filePattern=gs://${{env.GCS_BUCKET}}/${{env.SAMPLE_DATA_DIR}}/${{env.INPUT_PARQUET_FILE_NAME}}*.parquet \ | |
| --dataset=${{env.PARQUET_DATASET_ID}} \ | |
| --inspectTemplateName=${{env.INSPECT_TEMPLATE_PATH}} \ | |
| --batchSize=200000 \ | |
| --DLPMethod=INSPECT \ | |
| --serviceAccount=${{env.SERVICE_ACCOUNT_EMAIL}} \ | |
| --jobName=${{env.PARQUET_INSPECT_JOB_NAME}}" | |
| - name: Verify BQ table | |
| env: | |
| PARQUET_DATASET_ID: ${{ needs.generate-uuid.outputs.output8 }} | |
| run: | | |
| not_verified=true | |
| table_count=0 | |
| while $not_verified; do | |
| table_count=$(($(bq query --use_legacy_sql=false --format csv 'SELECT * FROM `${{env.PROJECT_ID}}.${{env.PARQUET_DATASET_ID}}`.__TABLES__ WHERE table_id="${{env.INSPECTION_TABLE_ID}}"' | wc -l ) -1)) | |
| if [[ "$table_count" == "1" ]]; then | |
| echo "PASSED"; | |
| not_verified=false; | |
| else | |
| sleep 30s | |
| fi | |
| echo "Got number of tables in BQ with id ${{env.INSPECTION_TABLE_ID}}: $table_count ." | |
| done | |
| echo "Verified number of tables in BQ with id ${{env.INSPECTION_TABLE_ID}}: $table_count ." | |
| - name: Verify distinct rows | |
| env: | |
| PARQUET_DATASET_ID: ${{ needs.generate-uuid.outputs.output8 }} | |
| run: | | |
| not_verified=true | |
| row_count=0 | |
| while $not_verified; do | |
| row_count_json=$(bq query --use_legacy_sql=false --format json 'SELECT COUNT(*) FROM `${{env.PROJECT_ID}}.${{env.PARQUET_DATASET_ID}}.${{env.INSPECTION_TABLE_ID}}`') | |
| row_count=$(echo "$row_count_json" | jq -r '.[].f0_') | |
| if [[ "$row_count" == ${{env.PARQUET_INSPECTION_RECORDS_THRESHOLD}} ]]; then | |
| echo "PASSED"; | |
| not_verified=false; | |
| else | |
| sleep 30s | |
| fi | |
| echo "Got number of rows in ${{env.INSPECTION_TABLE_ID}}: $row_count." | |
| done | |
| echo "Verified number of rows in ${{env.INSPECTION_TABLE_ID}}: $row_count." | |
| # Inspect only existing orc files | |
| inspect-orc-data: | |
| needs: | |
| - generate-uuid | |
| - create-dataset | |
| runs-on: | |
| - self-hosted | |
| - CI | |
| timeout-minutes: 30 | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Setup Java | |
| uses: actions/setup-java@v3 | |
| with: | |
| distribution: 'zulu' | |
| java-version: 17 | |
| - name: Setup Gradle | |
| uses: gradle/gradle-build-action@v2 | |
| - name: Run DLP Pipeline | |
| env: | |
| ORC_INSPECT_JOB_NAME: ${{ needs.generate-uuid.outputs.output10 }} | |
| ORC_DATASET_ID: ${{ needs.generate-uuid.outputs.output12 }} | |
| run: | | |
| ./gradlew run -DmainClass=com.google.swarm.tokenization.DLPTextToBigQueryStreamingV2 -Pargs=" \ | |
| --region=${{env.REGION}} \ | |
| --project=${{env.PROJECT_ID}} \ | |
| --tempLocation=gs://${{env.GCS_BUCKET}}/temp \ | |
| --numWorkers=1 --maxNumWorkers=2 \ | |
| --runner=DataflowRunner \ | |
| --filePattern=gs://${{env.GCS_BUCKET}}/${{env.SAMPLE_DATA_DIR}}/${{env.INPUT_ORC_FILE_NAME}}.orc \ | |
| --dataset=${{env.ORC_DATASET_ID}} \ | |
| --inspectTemplateName=${{env.INSPECT_TEMPLATE_PATH}} \ | |
| --batchSize=200000 \ | |
| --DLPMethod=INSPECT \ | |
| --serviceAccount=${{env.SERVICE_ACCOUNT_EMAIL}} \ | |
| --jobName=${{env.ORC_INSPECT_JOB_NAME}}" | |
| - name: Verify BQ table | |
| env: | |
| ORC_DATASET_ID: ${{ needs.generate-uuid.outputs.output12 }} | |
| run: | | |
| not_verified=true | |
| table_count=0 | |
| while $not_verified; do | |
| table_count=$(($(bq query --use_legacy_sql=false --format csv 'SELECT * FROM `${{env.PROJECT_ID}}.${{env.ORC_DATASET_ID}}`.__TABLES__ WHERE table_id="${{env.INSPECTION_TABLE_ID}}"' | wc -l ) -1)) | |
| if [[ "$table_count" == "1" ]]; then | |
| echo "PASSED"; | |
| not_verified=false; | |
| else | |
| sleep 30s | |
| fi | |
| echo "Got number of tables in ORC BQ dataset with id ${{env.INSPECTION_TABLE_ID}}: $table_count ." | |
| done | |
| echo "Verified number of tables in ORC BQ dataset with id ${{env.INSPECTION_TABLE_ID}}: $table_count ." | |
| - name: Verify distinct rows | |
| env: | |
| ORC_DATASET_ID: ${{ needs.generate-uuid.outputs.output12 }} | |
| run: | | |
| not_verified=true | |
| row_count=0 | |
| while $not_verified; do | |
| row_count_json=$(bq query --use_legacy_sql=false --format json 'SELECT COUNT(*) FROM `${{env.PROJECT_ID}}.${{env.ORC_DATASET_ID}}.${{env.INSPECTION_TABLE_ID}}`') | |
| row_count=$(echo "$row_count_json" | jq -r '.[].f0_') | |
| if [[ "$row_count" == ${{env.ORC_INSPECTION_RECORDS_THRESHOLD}} ]]; then | |
| echo "PASSED"; | |
| not_verified=false; | |
| else | |
| sleep 30s | |
| fi | |
| echo "Got number of rows in ${{env.INSPECTION_TABLE_ID}}: $row_count." | |
| done | |
| echo "Verified number of rows in ${{env.INSPECTION_TABLE_ID}}: $row_count." | |
| de-identification: | |
| needs: | |
| - generate-uuid | |
| - create-dataset | |
| runs-on: | |
| - self-hosted | |
| - CI | |
| timeout-minutes: 30 | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Setup Java | |
| uses: actions/setup-java@v3 | |
| with: | |
| distribution: 'zulu' | |
| java-version: 17 | |
| - name: Setup Gradle | |
| uses: gradle/gradle-build-action@v2 | |
| - name: Run DLP Pipeline | |
| env: | |
| DEID_JOB_NAME: ${{ needs.generate-uuid.outputs.output3 }} | |
| DATASET_ID: ${{ needs.generate-uuid.outputs.output5 }} | |
| run: | | |
| ./gradlew run -DmainClass=com.google.swarm.tokenization.DLPTextToBigQueryStreamingV2 -Pargs=" \ | |
| --streaming --enableStreamingEngine \ | |
| --region=${{env.REGION}} \ | |
| --project=${{env.PROJECT_ID}} \ | |
| --tempLocation=gs://${{env.GCS_BUCKET}}/temp \ | |
| --numWorkers=2 \ | |
| --maxNumWorkers=3 \ | |
| --runner=DataflowRunner \ | |
| --filePattern=gs://${{env.GCS_BUCKET}}/${{env.INPUT_FILE_NAME}}*.csv \ | |
| --dataset=${{env.DATASET_ID}} \ | |
| --workerMachineType=n1-highmem-4 \ | |
| --inspectTemplateName=${{env.INSPECT_TEMPLATE_PATH}} \ | |
| --deidentifyTemplateName=${{env.DEID_TEMPLATE_PATH}} \ | |
| --batchSize=200000 \ | |
| --DLPMethod=DEID \ | |
| --serviceAccount=${{env.SERVICE_ACCOUNT_EMAIL}} \ | |
| --jobName=${{env.DEID_JOB_NAME}} \ | |
| --gcsNotificationTopic=${{env.GCS_NOTIFICATION_TOPIC}}" | |
| sleep 30s | |
| if gsutil stat gs://${{env.GCS_BUCKET}}/${{env.INPUT_FILE_NAME}}_pub_sub.csv; then | |
| echo "Pub Sub CSV File exists hence need not copy anymore" | |
| else | |
| gsutil cp gs://${{env.GCS_BUCKET}}/temp/csv/tiny_csv_pub_sub.csv gs://${{env.GCS_BUCKET}} | |
| fi | |
| - name: Verify BQ tables | |
| env: | |
| DATASET_ID: ${{ needs.generate-uuid.outputs.output5 }} | |
| run: | | |
| not_verified=true | |
| table_count=0 | |
| while $not_verified; do | |
| table_count=$(($(bq query --use_legacy_sql=false --format csv 'SELECT * FROM `${{env.PROJECT_ID}}.${{env.DATASET_ID}}`.__TABLES__ WHERE table_id LIKE "${{env.INPUT_FILE_NAME}}%"' | wc -l ) -1)) | |
| if [[ "$table_count" == "2" ]]; then | |
| echo "PASSED"; | |
| not_verified=false; | |
| else | |
| sleep 30s | |
| fi | |
| echo "Got number of tables in BQ with id ${{env.INPUT_FILE_NAME}}*: $table_count ." | |
| done | |
| echo "Verified number of tables in BQ with id ${{env.INPUT_FILE_NAME}}*: $table_count ." | |
| - name: Verify distinct rows of existing file | |
| env: | |
| DATASET_ID: ${{ needs.generate-uuid.outputs.output5 }} | |
| run: | | |
| rc_orig=$(($(gcloud storage cat gs://${{env.GCS_BUCKET}}/${{env.INPUT_FILE_NAME}}.csv | wc -l ) -1)) | |
| not_verified=true | |
| row_count=0 | |
| while $not_verified; do | |
| row_count_json=$(bq query --use_legacy_sql=false --format json 'SELECT COUNT(DISTINCT(ID)) FROM `${{env.PROJECT_ID}}.${{env.DATASET_ID}}.${{env.INPUT_FILE_NAME}}`') | |
| row_count=$(echo "$row_count_json" | jq -r '.[].f0_') | |
| if [[ "$row_count" == "$rc_orig" ]]; then | |
| echo "PASSED"; | |
| not_verified=false; | |
| else | |
| sleep 30s | |
| fi | |
| echo "Got number of rows in ${{env.INPUT_FILE_NAME}}: $row_count." | |
| done | |
| echo "# records in input CSV file are: $rc_orig." | |
| echo "Verified number of rows in ${{env.INPUT_FILE_NAME}}: $row_count." | |
| - name: Verify distinct rows of newly added file | |
| env: | |
| DATASET_ID: ${{ needs.generate-uuid.outputs.output5 }} | |
| run: | | |
| rc_orig=$(($(gcloud storage cat gs://${{env.GCS_BUCKET}}/${{env.INPUT_FILE_NAME}}_pub_sub.csv | wc -l ) -1)) | |
| not_verified=true | |
| while $not_verified; do | |
| row_count_json=$(bq query --use_legacy_sql=false --format json 'SELECT COUNT(DISTINCT(ID)) FROM `${{env.PROJECT_ID}}.${{env.DATASET_ID}}.${{env.INPUT_FILE_NAME}}_pub_sub`') | |
| row_count=$(echo "$row_count_json" | jq -r '.[].f0_') | |
| if [[ "$row_count" == "$rc_orig" ]]; then | |
| echo "PASSED"; | |
| not_verified=false; | |
| else | |
| sleep 30s | |
| fi | |
| echo "Got number of rows in ${{env.INPUT_FILE_NAME}}_pub_sub: $row_count." | |
| done | |
| echo "# records in input CSV file are: $rc_orig." | |
| echo "Verified number of rows in ${{env.INPUT_FILE_NAME}}_pub_sub: $row_count." | |
| # Deidentify only existing orc files and store results in BigQuery dataset | |
| deidentify-orc-data-bq: | |
| needs: | |
| - generate-uuid | |
| - create-dataset | |
| runs-on: | |
| - self-hosted | |
| - CI | |
| timeout-minutes: 30 | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Setup Java | |
| uses: actions/setup-java@v3 | |
| with: | |
| distribution: 'zulu' | |
| java-version: 17 | |
| - name: Setup Gradle | |
| uses: gradle/gradle-build-action@v2 | |
| - name: Run DLP Pipeline | |
| env: | |
| ORC_DEID_BQ_JOB_NAME: ${{ needs.generate-uuid.outputs.output11 }} | |
| ORC_DATASET_ID: ${{ needs.generate-uuid.outputs.output12 }} | |
| run: | | |
| ./gradlew run -DmainClass=com.google.swarm.tokenization.DLPTextToBigQueryStreamingV2 -Pargs=" \ | |
| --region=${{env.REGION}} \ | |
| --project=${{env.PROJECT_ID}} \ | |
| --tempLocation=gs://${{env.GCS_BUCKET}}/temp \ | |
| --numWorkers=1 --maxNumWorkers=2 \ | |
| --runner=DataflowRunner \ | |
| --filePattern=gs://${{env.GCS_BUCKET}}/${{env.SAMPLE_DATA_DIR}}/${{env.INPUT_ORC_FILE_NAME}}.orc \ | |
| --dataset=${{env.ORC_DATASET_ID}} \ | |
| --inspectTemplateName=${{env.INSPECT_TEMPLATE_PATH}} \ | |
| --deidentifyTemplateName=${{env.PARQUET_DEID_TEMPLATE_PATH}} \ | |
| --batchSize=200000 \ | |
| --DLPMethod=DEID \ | |
| --serviceAccount=${{env.SERVICE_ACCOUNT_EMAIL}} \ | |
| --jobName=${{env.ORC_DEID_BQ_JOB_NAME}}" | |
| - name: Verify BQ tables | |
| env: | |
| ORC_DATASET_ID: ${{ needs.generate-uuid.outputs.output12 }} | |
| run: | | |
| not_verified=true | |
| table_count=0 | |
| while $not_verified; do | |
| table_count=$(($(bq query --use_legacy_sql=false --format csv 'SELECT * FROM `${{env.PROJECT_ID}}.${{env.ORC_DATASET_ID}}`.__TABLES__ WHERE table_id LIKE "${{env.INPUT_ORC_FILE_NAME}}%"' | wc -l ) -1)) | |
| if [[ "$table_count" == "1" ]]; then | |
| echo "PASSED"; | |
| not_verified=false; | |
| else | |
| sleep 30s | |
| fi | |
| echo "Got number of tables in BQ with id ${{env.INPUT_ORC_FILE_NAME}}: $table_count ." | |
| done | |
| echo "Verified number of tables in BQ with id ${{env.INPUT_ORC_FILE_NAME}}: $table_count ." | |
| - name: Verify distinct rows of existing file | |
| env: | |
| ORC_DATASET_ID: ${{ needs.generate-uuid.outputs.output12 }} | |
| run: | | |
| rc_orig=${{ env.ORC_DEID_RECORDS_COUNT }} | |
| not_verified=true | |
| row_count=0 | |
| while $not_verified; do | |
| row_count_json=$(bq query --use_legacy_sql=false --format json 'SELECT COUNT(DISTINCT(ID)) FROM `${{env.PROJECT_ID}}.${{env.ORC_DATASET_ID}}.${{env.INPUT_ORC_FILE_NAME}}`') | |
| row_count=$(echo "$row_count_json" | jq -r '.[].f0_') | |
| if [[ "$row_count" == "$rc_orig" ]]; then | |
| echo "PASSED"; | |
| not_verified=false; | |
| else | |
| sleep 30s | |
| fi | |
| echo "Got number of rows in ${{env.INPUT_ORC_FILE_NAME}}: $row_count." | |
| done | |
| echo "# records in input ORC file are: $rc_orig." | |
| echo "Verified number of rows in ${{env.INPUT_ORC_FILE_NAME}}: $row_count." | |
| deidentify-orc-data-gcs: | |
| needs: | |
| - generate-uuid | |
| - create-output-bucket | |
| runs-on: | |
| - self-hosted | |
| - CI | |
| timeout-minutes: 30 | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Setup Java | |
| uses: actions/setup-java@v1 | |
| with: | |
| java-version: 11 | |
| - name: Setup Gradle | |
| uses: gradle/gradle-build-action@v2 | |
| - name: Run DLP Pipeline | |
| env: | |
| ORC_DEID_GCS_JOB_NAME: ${{ needs.generate-uuid.outputs.output13 }} | |
| OUTPUT_GCS_BUCKET: ${{ needs.generate-uuid.outputs.output9 }} | |
| run: | | |
| gradle run -DmainClass=com.google.swarm.tokenization.DLPTextToBigQueryStreamingV2 -Pargs=" \ | |
| --region=${{env.REGION}} \ | |
| --project=${{env.PROJECT_ID}} \ | |
| --tempLocation=gs://${{env.GCS_BUCKET}}/temp \ | |
| --numWorkers=2 \ | |
| --maxNumWorkers=3 \ | |
| --runner=DataflowRunner \ | |
| --filePattern=gs://${{env.GCS_BUCKET}}/${{env.SAMPLE_DATA_DIR}}/${{env.INPUT_ORC_FILE_NAME}}.orc \ | |
| --outputBucket=gs://${{env.OUTPUT_GCS_BUCKET}} \ | |
| --workerMachineType=n1-highmem-4 \ | |
| --inspectTemplateName=${{env.INSPECT_TEMPLATE_PATH}} \ | |
| --deidentifyTemplateName=${{env.PARQUET_DEID_TEMPLATE_PATH}} \ | |
| --batchSize=200000 \ | |
| --DLPMethod=DEID \ | |
| --jobName=${{env.ORC_DEID_GCS_JOB_NAME}}-gcs \ | |
| --serviceAccount=${{env.SERVICE_ACCOUNT_EMAIL}}" | |
| - name: Verify output file | |
| env: | |
| OUTPUT_GCS_BUCKET: ${{ needs.generate-uuid.outputs.output9 }} | |
| run: | | |
| not_verified=true | |
| file_count=0 | |
| while $not_verified; do | |
| file_count=$(gcloud storage ls gs://${{env.OUTPUT_GCS_BUCKET}}/${{env.INPUT_ORC_FILE_NAME}}*.orc | wc -l) | |
| if [[ "$file_count" == "1" ]]; then | |
| echo "PASSED"; | |
| not_verified=false; | |
| else | |
| sleep 30s | |
| fi | |
| echo "Got output files in GCS with name ${{env.INPUT_ORC_FILE_NAME}}*: $file_count ." | |
| done | |
| echo "Verified output files in GCS with name ${{env.INPUT_ORC_FILE_NAME}}*: $file_count ." | |
| # Deidentify only existing parquet files | |
| deidentify-parquet-data: | |
| needs: | |
| - generate-uuid | |
| - create-dataset | |
| runs-on: | |
| - self-hosted | |
| - CI | |
| timeout-minutes: 30 | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Setup Java | |
| uses: actions/setup-java@v3 | |
| with: | |
| distribution: 'zulu' | |
| java-version: 17 | |
| - name: Setup Gradle | |
| uses: gradle/gradle-build-action@v2 | |
| - name: Run DLP Pipeline | |
| env: | |
| PARQUET_DEID_JOB_NAME: ${{ needs.generate-uuid.outputs.output7 }} | |
| PARQUET_DATASET_ID: ${{ needs.generate-uuid.outputs.output8 }} | |
| run: | | |
| ./gradlew run -DmainClass=com.google.swarm.tokenization.DLPTextToBigQueryStreamingV2 -Pargs=" \ | |
| --region=${{env.REGION}} \ | |
| --project=${{env.PROJECT_ID}} \ | |
| --tempLocation=gs://${{env.GCS_BUCKET}}/temp \ | |
| --numWorkers=1 --maxNumWorkers=2 \ | |
| --runner=DataflowRunner \ | |
| --filePattern=gs://${{env.GCS_BUCKET}}/${{env.SAMPLE_DATA_DIR}}/${{env.INPUT_PARQUET_FILE_NAME}}.parquet \ | |
| --dataset=${{env.PARQUET_DATASET_ID}} \ | |
| --inspectTemplateName=${{env.INSPECT_TEMPLATE_PATH}} \ | |
| --deidentifyTemplateName=${{env.PARQUET_DEID_TEMPLATE_PATH}} \ | |
| --batchSize=200000 \ | |
| --DLPMethod=DEID \ | |
| --serviceAccount=${{env.SERVICE_ACCOUNT_EMAIL}} \ | |
| --jobName=${{env.PARQUET_DEID_JOB_NAME}}" | |
| - name: Verify BQ tables | |
| env: | |
| PARQUET_DATASET_ID: ${{ needs.generate-uuid.outputs.output8 }} | |
| run: | | |
| not_verified=true | |
| table_count=0 | |
| while $not_verified; do | |
| table_count=$(($(bq query --use_legacy_sql=false --format csv 'SELECT * FROM `${{env.PROJECT_ID}}.${{env.PARQUET_DATASET_ID}}`.__TABLES__ WHERE table_id LIKE "${{env.INPUT_PARQUET_FILE_NAME}}%"' | wc -l ) -1)) | |
| if [[ "$table_count" == "1" ]]; then | |
| echo "PASSED"; | |
| not_verified=false; | |
| else | |
| sleep 30s | |
| fi | |
| echo "Got number of tables in BQ with id ${{env.INPUT_PARQUET_FILE_NAME}}*: $table_count ." | |
| done | |
| echo "Verified number of tables in BQ with id ${{env.INPUT_PARQUET_FILE_NAME}}*: $table_count ." | |
| - name: Verify distinct rows of existing file | |
| env: | |
| PARQUET_DATASET_ID: ${{ needs.generate-uuid.outputs.output8 }} | |
| run: | | |
| rc_orig=$(($(gcloud storage cat gs://${{env.GCS_BUCKET}}/${{env.SAMPLE_DATA_DIR}}/${{env.INPUT_FILE_NAME}}.csv | wc -l ) -1)) | |
| not_verified=true | |
| row_count=0 | |
| while $not_verified; do | |
| row_count_json=$(bq query --use_legacy_sql=false --format json 'SELECT COUNT(DISTINCT(ID)) FROM `${{env.PROJECT_ID}}.${{env.PARQUET_DATASET_ID}}.${{env.INPUT_PARQUET_FILE_NAME}}`') | |
| row_count=$(echo "$row_count_json" | jq -r '.[].f0_') | |
| if [[ "$row_count" == "$rc_orig" ]]; then | |
| echo "PASSED"; | |
| not_verified=false; | |
| else | |
| sleep 30s | |
| fi | |
| echo "Got number of rows in ${{env.INPUT_PARQUET_FILE_NAME}}: $row_count." | |
| done | |
| echo "# records in input Parquet file are: $rc_orig." | |
| echo "Verified number of rows in ${{env.INPUT_PARQUET_FILE_NAME}}: $row_count." | |
| de-identification-streaming-write: | |
| needs: | |
| - generate-uuid | |
| - create-dataset | |
| runs-on: | |
| - self-hosted | |
| - CI | |
| timeout-minutes: 30 | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Setup Java | |
| uses: actions/setup-java@v3 | |
| with: | |
| distribution: 'zulu' | |
| java-version: 17 | |
| - name: Setup Gradle | |
| uses: gradle/gradle-build-action@v2 | |
| - name: Run DLP Pipeline for streaming write | |
| env: | |
| DATASET_ID: ${{ needs.generate-uuid.outputs.output5 }} | |
| run: | | |
| ./gradlew run -DmainClass=com.google.swarm.tokenization.DLPTextToBigQueryStreamingV2 -Pargs=" \ | |
| --region=${{env.REGION}} \ | |
| --project=${{env.PROJECT_ID}} \ | |
| --tempLocation=gs://${{env.GCS_BUCKET}}/temp \ | |
| --numWorkers=1 \ | |
| --maxNumWorkers=2 \ | |
| --runner=DataflowRunner \ | |
| --filePattern=gs://${{env.GCS_BUCKET}}/${{env.INPUT_STREAMING_WRITE_FILE_NAME}}.csv \ | |
| --dataset=${{env.DATASET_ID}} \ | |
| --workerMachineType=n1-highmem-4 \ | |
| --inspectTemplateName=${{env.INSPECT_TEMPLATE_PATH}} \ | |
| --deidentifyTemplateName=${{env.DEID_TEMPLATE_PATH}} \ | |
| --batchSize=200000 \ | |
| --DLPMethod=DEID \ | |
| --serviceAccount=${{env.SERVICE_ACCOUNT_EMAIL}} \ | |
| --useStorageWriteApi \ | |
| --storageWriteApiTriggeringFrequencySec=2 \ | |
| --numStorageWriteApiStreams=2" | |
| - name: Verify BQ table for streaming write | |
| env: | |
| DATASET_ID: ${{ needs.generate-uuid.outputs.output5 }} | |
| run: | | |
| not_verified=true | |
| table_count=0 | |
| while $not_verified; do | |
| table_count=$(($(bq query --use_legacy_sql=false --format csv 'SELECT * FROM `${{env.PROJECT_ID}}.${{env.DATASET_ID}}`.__TABLES__ WHERE table_id LIKE "${{env.INPUT_STREAMING_WRITE_FILE_NAME}}%"' | wc -l ) -1)) | |
| if [[ "$table_count" == "1" ]]; then | |
| echo "PASSED"; | |
| not_verified=false; | |
| else | |
| sleep 30s | |
| fi | |
| echo "Got number of tables in BQ with id ${{env.INPUT_STREAMING_WRITE_FILE_NAME}}: $table_count ." | |
| done | |
| echo "Verified number of tables in BQ with id ${{env.INPUT_STREAMING_WRITE_FILE_NAME}}: $table_count ." | |
| - name: Verify distinct rows of streaming write file | |
| env: | |
| DATASET_ID: ${{ needs.generate-uuid.outputs.output5 }} | |
| run: | | |
| rc_orig=$(($(gcloud storage cat gs://${{env.GCS_BUCKET}}/${{env.INPUT_STREAMING_WRITE_FILE_NAME}}.csv | wc -l ) -1)) | |
| not_verified=true | |
| row_count=0 | |
| while $not_verified; do | |
| row_count_json=$(bq query --use_legacy_sql=false --format json 'SELECT COUNT(DISTINCT(ID)) FROM `${{env.PROJECT_ID}}.${{env.DATASET_ID}}.${{env.INPUT_STREAMING_WRITE_FILE_NAME}}`') | |
| row_count=$(echo "$row_count_json" | jq -r '.[].f0_') | |
| if [[ "$row_count" == "$rc_orig" ]]; then | |
| echo "PASSED"; | |
| not_verified=false; | |
| else | |
| sleep 30s | |
| fi | |
| echo "Got number of rows in ${{env.INPUT_STREAMING_WRITE_FILE_NAME}}: $row_count." | |
| done | |
| echo "# records in input CSV file are: $rc_orig." | |
| echo "Verified number of rows in ${{env.INPUT_STREAMING_WRITE_FILE_NAME}}: $row_count." | |
| de-identification-with-gcs-output: | |
| needs: | |
| - generate-uuid | |
| - create-output-bucket | |
| runs-on: | |
| - self-hosted | |
| - CI | |
| timeout-minutes: 30 | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Setup Java | |
| uses: actions/setup-java@v1 | |
| with: | |
| java-version: 11 | |
| - name: Setup Gradle | |
| uses: gradle/gradle-build-action@v2 | |
| - name: Run DLP Pipeline | |
| env: | |
| DEID_JOB_NAME: ${{ needs.generate-uuid.outputs.output3 }} | |
| OUTPUT_GCS_BUCKET: ${{ needs.generate-uuid.outputs.output9 }} | |
| run: | | |
| gradle run -DmainClass=com.google.swarm.tokenization.DLPTextToBigQueryStreamingV2 -Pargs=" \ | |
| --region=${{env.REGION}} \ | |
| --project=${{env.PROJECT_ID}} \ | |
| --tempLocation=gs://${{env.GCS_BUCKET}}/temp \ | |
| --numWorkers=2 \ | |
| --maxNumWorkers=3 \ | |
| --runner=DataflowRunner \ | |
| --filePattern=gs://${{env.GCS_BUCKET}}/${{env.INPUT_FILE_NAME}}.csv \ | |
| --outputBucket=gs://${{env.OUTPUT_GCS_BUCKET}} \ | |
| --workerMachineType=n1-highmem-4 \ | |
| --inspectTemplateName=${{env.INSPECT_TEMPLATE_PATH}} \ | |
| --deidentifyTemplateName=${{env.DEID_TEMPLATE_PATH}} \ | |
| --batchSize=200000 \ | |
| --DLPMethod=DEID \ | |
| --jobName=${{env.DEID_JOB_NAME}}-gcs \ | |
| --serviceAccount=${{env.SERVICE_ACCOUNT_EMAIL}}" | |
| - name: Verify output file | |
| env: | |
| OUTPUT_GCS_BUCKET: ${{ needs.generate-uuid.outputs.output9 }} | |
| run: | | |
| not_verified=true | |
| file_count=0 | |
| while $not_verified; do | |
| file_count=$(gcloud storage ls gs://${{env.OUTPUT_GCS_BUCKET}}/${{env.INPUT_FILE_NAME}}*.csv | wc -l) | |
| if [[ "$file_count" == "1" ]]; then | |
| echo "PASSED"; | |
| not_verified=false; | |
| else | |
| sleep 30s | |
| fi | |
| echo "Got output files in GCS with name ${{env.INPUT_FILE_NAME}}*: $file_count ." | |
| done | |
| echo "Verified output files in GCS with name ${{env.INPUT_FILE_NAME}}*: $file_count ." | |
| - name: Verify rows in output file | |
| env: | |
| OUTPUT_GCS_BUCKET: ${{ needs.generate-uuid.outputs.output9 }} | |
| run: | | |
| output_file_name=$(gcloud storage ls gs://${{env.OUTPUT_GCS_BUCKET}}/${{env.INPUT_FILE_NAME}}*.csv) | |
| rc_orig=$(($(gcloud storage cat gs://${{env.GCS_BUCKET}}/${{env.INPUT_FILE_NAME}}.csv | wc -l ) -1)) | |
| rc_output=$(($(gcloud storage cat $output_file_name | wc -l ))) | |
| if [[ "$rc_output" == "$rc_orig" ]]; then | |
| echo "PASSED"; | |
| fi | |
| echo "Verified number of rows in output file : $output_file_name" | |
| re-identification: | |
| needs: | |
| - generate-uuid | |
| - create-dataset | |
| - de-identification | |
| runs-on: | |
| - self-hosted | |
| - CI | |
| timeout-minutes: 30 | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Setup Java | |
| uses: actions/setup-java@v3 | |
| with: | |
| distribution: 'zulu' | |
| java-version: 17 | |
| - name: Setup Gradle | |
| uses: gradle/gradle-build-action@v2 | |
| - name: Store query in GCS bucket | |
| env: | |
| DATASET_ID: ${{ needs.generate-uuid.outputs.output5 }} | |
| run: | | |
| export QUERY="SELECT ID, Card_Number, Card_Holders_Name FROM \`${{env.PROJECT_ID}}.${{env.DATASET_ID}}.${{env.INPUT_FILE_NAME}}\`" | |
| cat << EOF | gsutil cp - gs://${GCS_BUCKET}/${{env.REIDENTIFICATION_QUERY_FILE}} | |
| ${QUERY} | |
| EOF | |
| - name: Create a PubSub topic | |
| run: | | |
| if [[ $(gcloud pubsub topics list --filter="name:${{env.PUBSUB_TOPIC_NAME}}") ]]; then | |
| echo "Topic already created!" | |
| else | |
| gcloud pubsub topics create ${{env.PUBSUB_TOPIC_NAME}} | |
| echo "Created a new topic!" | |
| fi | |
| - name: Run DLP Pipeline | |
| env: | |
| REID_JOB_NAME: ${{ needs.generate-uuid.outputs.output4 }} | |
| DATASET_ID: ${{ needs.generate-uuid.outputs.output5 }} | |
| run: | | |
| ./gradlew run -DmainClass=com.google.swarm.tokenization.DLPTextToBigQueryStreamingV2 -Pargs=" \ | |
| --region=${{env.REGION}} \ | |
| --project=${{env.PROJECT_ID}} \ | |
| --tempLocation=gs://${{env.GCS_BUCKET}}/temp \ | |
| --numWorkers=1 \ | |
| --maxNumWorkers=2 \ | |
| --runner=DataflowRunner \ | |
| --tableRef=${{env.PROJECT_ID}}:${{env.DATASET_ID}}.${{env.INPUT_FILE_NAME}} \ | |
| --dataset=${{env.DATASET_ID}} \ | |
| --topic=projects/${{env.PROJECT_ID}}/topics/${{env.PUBSUB_TOPIC_NAME}} \ | |
| --autoscalingAlgorithm=THROUGHPUT_BASED \ | |
| --workerMachineType=n1-highmem-4 \ | |
| --deidentifyTemplateName=${{env.REID_TEMPLATE_PATH}} \ | |
| --DLPMethod=REID \ | |
| --keyRange=1024 \ | |
| --queryPath=gs://${GCS_BUCKET}/${{env.REIDENTIFICATION_QUERY_FILE}} \ | |
| --serviceAccount=${{env.SERVICE_ACCOUNT_EMAIL}} \ | |
| --jobName=${{env.REID_JOB_NAME}}" | |
| - name: Verify BQ table | |
| env: | |
| DATASET_ID: ${{ needs.generate-uuid.outputs.output5 }} | |
| run: | | |
| not_verified=true | |
| table_count=0 | |
| while $not_verified; do | |
| table_count=$(($(bq query --use_legacy_sql=false --format csv 'SELECT * FROM `${{env.PROJECT_ID}}.${{env.DATASET_ID}}`.__TABLES__ WHERE table_id="${{env.INPUT_FILE_NAME}}_re_id"' | wc -l ) -1)) | |
| if [[ "$table_count" == "1" ]]; then | |
| echo "PASSED"; | |
| not_verified=false; | |
| else | |
| sleep 30s | |
| fi | |
| done | |
| echo "Verified number of tables in BQ with id ${{env.INPUT_FILE_NAME}}_re_id: $table_count ." | |
| - name: Verify distinct rows | |
| env: | |
| DATASET_ID: ${{ needs.generate-uuid.outputs.output5 }} | |
| run: | | |
| rc_orig=$(($(bq query --nouse_legacy_sql --format=csv "$(gcloud storage cat gs://${{env.GCS_BUCKET}}/${{env.REIDENTIFICATION_QUERY_FILE}})" | wc -l) - 1)) | |
| not_verified=true | |
| row_count=0 | |
| while $not_verified; do | |
| row_count_json=$(bq query --use_legacy_sql=false --format json 'SELECT COUNT(ID) FROM `${{env.PROJECT_ID}}.${{env.DATASET_ID}}.${{env.INPUT_FILE_NAME}}_re_id`') | |
| row_count=$(echo "$row_count_json" | jq -r '.[].f0_') | |
| if [[ "$row_count" == "$rc_orig" ]]; then | |
| echo "PASSED"; | |
| not_verified=false; | |
| else | |
| sleep 30s | |
| fi | |
| done | |
| echo "# records in input query are: $rc_orig." | |
| echo "Verified number of rows in ${{env.INPUT_FILE_NAME}}_re_id: $row_count." | |
| clean-up: | |
| if: "!cancelled()" | |
| needs: | |
| - generate-uuid | |
| - inspection | |
| - inspect-parquet-data | |
| - inspect-orc-data | |
| - de-identification | |
| - deidentify-parquet-data | |
| - deidentify-orc-data-bq | |
| - deidentify-orc-data-gcs | |
| - de-identification-streaming-write | |
| - de-identification-with-gcs-output | |
| - re-identification | |
| runs-on: | |
| - self-hosted | |
| - CI | |
| timeout-minutes: 30 | |
| steps: | |
| - name: Clean-up BQ dataset and GCS Bucket | |
| if: "!cancelled()" | |
| env: | |
| DATASET_ID: ${{ needs.generate-uuid.outputs.output5 }} | |
| PARQUET_DATASET_ID: ${{ needs.generate-uuid.outputs.output8 }} | |
| ORC_DATASET_ID: ${{ needs.generate-uuid.outputs.output12 }} | |
| run: | | |
| bq rm -r -f -d ${{env.PROJECT_ID}}:${{env.DATASET_ID}} | |
| bq rm -r -f -d ${{env.PROJECT_ID}}:${{env.PARQUET_DATASET_ID}} | |
| bq rm -r -f -d ${{env.PROJECT_ID}}:${{env.ORC_DATASET_ID}} | |
| - name: Clean up pub_sub file | |
| run: | | |
| if ($(gsutil rm -f gs://${{env.GCS_BUCKET}}/${{env.INPUT_FILE_NAME}}_pub_sub.csv)); then | |
| echo "Cleared pub_sub file!" | |
| else | |
| echo "pub_sub file not present in storage bucket." | |
| fi | |
| - name: Clean up gcs bucket | |
| env: | |
| OUTPUT_GCS_BUCKET: ${{ needs.generate-uuid.outputs.output9 }} | |
| run: | | |
| gcloud storage rm --recursive gs://${{env.OUTPUT_GCS_BUCKET}} | |
| - name: Cancel Inspection Job | |
| if: "!cancelled()" | |
| env: | |
| INSPECT_JOB_NAME: ${{ needs.generate-uuid.outputs.output2 }} | |
| run: | | |
| inspect_job_data=$(gcloud dataflow jobs list --project ${{env.PROJECT_ID}} --status active --format json --filter="name=${{env.INSPECT_JOB_NAME}}") | |
| inspect_job_id=$(echo "$inspect_job_data" | jq -r '.[].id') | |
| if [[ "$inspect_job_id" == "" ]]; then | |
| echo "No job found with name: ${{env.INSPECT_JOB_NAME}}." | |
| else | |
| gcloud dataflow jobs cancel $inspect_job_id --project ${{env.PROJECT_ID}} | |
| fi | |
| - name: Cancel De-identification Job | |
| if: "!cancelled()" | |
| env: | |
| DEID_JOB_NAME: ${{ needs.generate-uuid.outputs.output3 }} | |
| run: | | |
| deid_job_data=$(gcloud dataflow jobs list --project ${{env.PROJECT_ID}} --status active --format json --filter="name=${{env.DEID_JOB_NAME}}") | |
| deid_job_id=$(echo "$deid_job_data" | jq -r '.[].id') | |
| if [[ "$deid_job_id" == "" ]]; then | |
| echo "No job found with name: ${{env.DEID_JOB_NAME}}." | |
| else | |
| gcloud dataflow jobs cancel $deid_job_id --project ${{env.PROJECT_ID}} | |
| fi |