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@GfellerLab

Cancer Immune Recognition Lab

Lab from David Gfeller from the University of Lausanne

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  1. SuperCell SuperCell Public

    Coarse-graining of large single-cell RNA-seq data into metacells

    R 89 13

  2. EPIC EPIC Public

    Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.

    R 84 23

  3. MixMHC2pred MixMHC2pred Public

    HLA-II ligand predictor.

    C++ 44 11

  4. MixMHCpred MixMHCpred Public

    HLA-I ligand predictor

    Python 43 8

  5. MixTCRpred MixTCRpred Public

    Predictor of TCR-epitope interactions

    Python 34 8

  6. PRIME PRIME Public

    PRedictor of IMmunogenic Epitopes

    C++ 24 4

Repositories

Showing 10 of 21 repositories
  • MixTCRcross Public

    Predictor of TCR cross-reactivity between a pair of epitopes

    GfellerLab/MixTCRcross’s past year of commit activity
    R 0 0 0 0 Updated Sep 25, 2025
  • MixMHCpred Public

    HLA-I ligand predictor

    GfellerLab/MixMHCpred’s past year of commit activity
    Python 43 8 1 0 Updated Sep 24, 2025
  • PRIME Public

    PRedictor of IMmunogenic Epitopes

    GfellerLab/PRIME’s past year of commit activity
    C++ 24 4 2 0 Updated Sep 24, 2025
  • TEMPO Public

    TCR-epitope motif-based interaction predictor

    GfellerLab/TEMPO’s past year of commit activity
    0 0 0 0 Updated Sep 19, 2025
  • MixTCRpred Public

    Predictor of TCR-epitope interactions

    GfellerLab/MixTCRpred’s past year of commit activity
    Python 34 8 0 0 Updated Sep 9, 2025
  • SuperCell Public

    Coarse-graining of large single-cell RNA-seq data into metacells

    GfellerLab/SuperCell’s past year of commit activity
    R 89 GPL-3.0 13 2 1 Updated Jul 4, 2025
  • ggseqlogo Public Forked from omarwagih/ggseqlogo

    Publication-quality sequence logos in R

    GfellerLab/ggseqlogo’s past year of commit activity
    R 1 32 0 0 Updated Feb 20, 2025
  • MoDec Public

    Tool for Motif Deconvolution in large HLA-II ligand datasets without the need of prior alignment.

    GfellerLab/MoDec’s past year of commit activity
    R 14 1 0 0 Updated Feb 17, 2025
  • SuperSpot Public
    GfellerLab/SuperSpot’s past year of commit activity
    HTML 2 0 1 0 Updated Nov 11, 2024
  • EPIC-ATAC_manuscript Public

    Code used for the analyses performed in the EPIC-ATAC manuscript

    GfellerLab/EPIC-ATAC_manuscript’s past year of commit activity
    R 3 0 0 0 Updated Oct 8, 2024
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