feature/stack

Merge branch 'develop' into feature/stack

Fixes ufs-community#248

.github/workflows/esmf-8.0.1_jasper-2.0.22_nceplibs-1.3.0.yml

@@ -0,0 +1,133 @@
+name: esmf-8.0.1_jasper-2.0.22_nceplibs-1.3.0
+on: [push, pull_request]
+
+jobs:
+  build:
+    runs-on: ${{ matrix.os }}
+    env:
+      CC: gcc-9
+      FC: gfortran-9
+      CXX: g++-9
+    strategy:
+      matrix:
+        os: [macos-10.15, ubuntu-20.04]
+        compiler: [gcc-9]      
+
+    steps:
+    - name: install-dependencies
+      run: |
+        if [[ ${{ matrix.os }} == "ubuntu-20.04" ]]; then
+          sudo apt-get update
+          sudo apt-get install doxygen
+          sudo apt-get install libmpich-dev
+          sudo apt-get install libnetcdf-dev libnetcdff-dev netcdf-bin pkg-config
+          sudo apt-get install libpng-dev
+          sudo apt-get install libjpeg-dev
+        elif [[ ${{ matrix.os }} == "macos-10.15" ]]; then
+          brew install doxygen
+          brew install mpich
+          brew install netcdf
+          brew install wget
+          if [[ ${{ matrix.compiler }} == "gcc-9" ]]; then
+            sudo ln -sf /usr/local/bin/gfortran-9 /usr/local/bin/gfortran
+          elif  [[ ${{ matrix.compiler }} == "gcc-10" ]]; then
+            sudo ln -sf /usr/local/bin/gfortran-10 /usr/local/bin/gfortran
+          fi
+        fi
+
+    - name: cache-esmf
+      id: cache-esmf
+      uses: actions/cache@v2
+      with:
+        path: ~/esmf
+        key: esmf-${{ runner.os }}-8.0.1-2
+
+    - name: build-esmf
+      if: steps.cache-esmf.outputs.cache-hit != 'true'
+      run: |
+        set -x
+        pushd ~
+        export ESMF_DIR=~/esmf-ESMF_8_0_1
+        wget https://github.com/esmf-org/esmf/archive/ESMF_8_0_1.tar.gz &> /dev/null && ls -l
+        tar zxf ESMF_8_0_1.tar.gz && ls -l
+        cd esmf-ESMF_8_0_1
+        export ESMF_COMM=mpich3
+        export ESMF_INSTALL_BINDIR=bin
+        export ESMF_INSTALL_LIBDIR=lib
+        export ESMF_INSTALL_MODDIR=mod
+        export ESMF_COMPILER=gfortran
+        export ESMF_INSTALL_PREFIX=~/esmf
+        export ESMF_NETCDF=split
+        if [[ ${{ matrix.os }} == "ubuntu-20.04" ]]; then 
+          export ESMF_NETCDF_INCLUDE=/usr/include
+          export ESMF_NETCDF_LIBPATH=/usr/x86_64-linux-gnu
+        elif [[ ${{ matrix.os }} == "macos-10.15" ]]; then
+          export ESMF_NETCDF_INCLUDE=/usr/local/include
+          export ESMF_NETCDF_LIBPATH=/usr/local/lib
+        fi
+        make -j2
+        make install
+
+    - name: cache-jasper
+      id: cache-jasper
+      uses: actions/cache@v2
+      with:
+        path: ~/jasper
+        key: jasper-${{ runner.os }}-2.0.22
+
+    - name: build-jasper
+      if: steps.cache-jasper.outputs.cache-hit != 'true'
+      run: |
+        set -x
+        pwd
+        wget https://github.com/jasper-software/jasper/archive/version-2.0.22.tar.gz &> /dev/null && ls -l
+        tar zxf version-2.0.22.tar.gz && ls -l
+        cd jasper-version-2.0.22
+        mkdir build-jasper && cd build-jasper
+        cmake .. -DCMAKE_INSTALL_PREFIX=~/jasper
+        make -j2
+        make install
+
+    - name: checkout-nceplibs
+      uses: actions/checkout@v2
+      with:
+        repository: NOAA-EMC/NCEPLIBS
+        path: nceplibs
+
+    - name: cache-nceplibs
+      id: cache-nceplibs
+      uses: actions/cache@v2
+      with:
+        path: ~/nceplibs
+        key: nceplibs-${{ runner.os }}-1.3.0
+
+    - name: build-nceplibs
+      run: |
+        set -x
+        export ESMFMKFILE=~/esmf/lib/esmf.mk
+        wget https://github.com/NOAA-EMC/NCEPLIBS/archive/v1.3.0.tar.gz &> /dev/null
+        tar zxf v1.3.0.tar.gz && ls -l
+        cd NCEPLIBS-1.3.0
+        mkdir build && cd build
+        cmake .. -DCMAKE_PREFIX_PATH='~;~/jasper' -DCMAKE_INSTALL_PREFIX='~/nceplibs' -DFLAT=ON
+        make -j2
+       
+    - name: checkout-ufs-utils
+      uses: actions/checkout@v2
+      with: 
+        path: ufs_utils
+
+    - name: build-ufs-utils
+      run: |
+        export ESMFMKFILE=~/esmf/lib/esmf.mk
+        cd ufs_utils
+        mkdir build && cd build
+        cmake .. -DCMAKE_PREFIX_PATH='~;~/jasper;~/nceplibs' -DENABLE_DOCS=On
+        make -j2
+        make test
+
+
+    
+
+
+

.github/workflows/esmf-8.0.1_jasper-2.0.22_nceplibs-develop.yml

@@ -0,0 +1,124 @@
+name: esmf-8.0.1_jasper-2.0.22_nceplibs-develop
+on: [push, pull_request]
+
+jobs:
+  build:
+    runs-on: ${{ matrix.os }}
+    env:
+      CC: gcc-9
+      FC: gfortran-9
+      CXX: g++-9
+    strategy:
+      matrix:
+        os: [macos-10.15, ubuntu-20.04]
+        compiler: [gcc-9]      
+
+    steps:
+    - name: install-dependencies
+      run: |
+        if [[ ${{ matrix.os }} == "ubuntu-20.04" ]]; then
+          sudo apt-get update
+          sudo apt-get install doxygen
+          sudo apt-get install libmpich-dev
+          sudo apt-get install libnetcdf-dev libnetcdff-dev netcdf-bin pkg-config
+          sudo apt-get install libpng-dev
+          sudo apt-get install libjpeg-dev
+        elif [[ ${{ matrix.os }} == "macos-10.15" ]]; then
+          brew install doxygen
+          brew install mpich
+          brew install netcdf
+          brew install wget
+          if [[ ${{ matrix.compiler }} == "gcc-9" ]]; then
+            sudo ln -sf /usr/local/bin/gfortran-9 /usr/local/bin/gfortran
+          elif  [[ ${{ matrix.compiler }} == "gcc-10" ]]; then
+            sudo ln -sf /usr/local/bin/gfortran-10 /usr/local/bin/gfortran
+          fi
+        fi
+
+    - name: cache-esmf
+      id: cache-esmf
+      uses: actions/cache@v2
+      with:
+        path: ~/esmf
+        key: esmf-${{ runner.os }}-8.0.1-2
+
+    - name: build-esmf
+      if: steps.cache-esmf.outputs.cache-hit != 'true'
+      run: |
+        set -x
+        pushd ~
+        export ESMF_DIR=~/esmf-ESMF_8_0_1
+        wget https://github.com/esmf-org/esmf/archive/ESMF_8_0_1.tar.gz &> /dev/null && ls -l
+        tar zxf ESMF_8_0_1.tar.gz && ls -l
+        cd esmf-ESMF_8_0_1
+        export ESMF_COMM=mpich3
+        export ESMF_INSTALL_BINDIR=bin
+        export ESMF_INSTALL_LIBDIR=lib
+        export ESMF_INSTALL_MODDIR=mod
+        export ESMF_COMPILER=gfortran
+        export ESMF_INSTALL_PREFIX=~/esmf
+        export ESMF_NETCDF=split
+        if [[ ${{ matrix.os }} == "ubuntu-20.04" ]]; then 
+          export ESMF_NETCDF_INCLUDE=/usr/include
+          export ESMF_NETCDF_LIBPATH=/usr/x86_64-linux-gnu
+        elif [[ ${{ matrix.os }} == "macos-10.15" ]]; then
+          export ESMF_NETCDF_INCLUDE=/usr/local/include
+          export ESMF_NETCDF_LIBPATH=/usr/local/lib
+        fi
+        make -j2
+        make install
+
+    - name: cache-jasper
+      id: cache-jasper
+      uses: actions/cache@v2
+      with:
+        path: ~/jasper
+        key: jasper-${{ runner.os }}-2.0.22
+
+    - name: build-jasper
+      if: steps.cache-jasper.outputs.cache-hit != 'true'
+      run: |
+        set -x
+        pwd
+        wget https://github.com/jasper-software/jasper/archive/version-2.0.22.tar.gz &> /dev/null && ls -l
+        tar zxf version-2.0.22.tar.gz && ls -l
+        cd jasper-version-2.0.22
+        mkdir build-jasper && cd build-jasper
+        cmake .. -DCMAKE_INSTALL_PREFIX=~/jasper
+        make -j2
+        make install
+
+    - name: checkout-nceplibs
+      uses: actions/checkout@v2
+      with:
+        repository: NOAA-EMC/NCEPLIBS
+        path: nceplibs
+
+    - name: build-nceplibs
+      run: |
+        set -x
+        export ESMFMKFILE=~/esmf/lib/esmf.mk
+        cd nceplibs
+        mkdir build && cd build
+        cmake .. -DCMAKE_PREFIX_PATH='~;~/jasper' -DCMAKE_INSTALL_PREFIX='~' -DFLAT=ON
+        make -j2
+       
+    - name: checkout-ufs-utils
+      uses: actions/checkout@v2
+      with: 
+        path: ufs_utils
+
+    - name: build-ufs-utils
+      run: |
+        export ESMFMKFILE=~/esmf/lib/esmf.mk
+        cd ufs_utils
+        mkdir build && cd build
+        cmake .. -DCMAKE_PREFIX_PATH='~;~/jasper' -DENABLE_DOCS=On
+        make -j2
+        make test
+
+
+    
+
+
+

.gitignore

@@ -9,3 +9,7 @@ exec/
 *.x
 
 *.swp
+*.o
+emcsfc_ice_blend
+ml01rg2.x
+

CMakeLists.txt

@@ -14,6 +14,7 @@ list(APPEND CMAKE_MODULE_PATH "${CMAKE_CURRENT_SOURCE_DIR}/cmake")
 
 # User options.
 option(OPENMP "use OpenMP threading" ON)
+option(ENABLE_DOCS "Enable generation of doxygen-based documentation." OFF)
 
 if(NOT CMAKE_BUILD_TYPE MATCHES "^(Debug|Release|RelWithDebInfo|MinSizeRel)$")
   message(STATUS "Setting build type to 'Release' as none was specified.")
@@ -22,6 +23,8 @@ if(NOT CMAKE_BUILD_TYPE MATCHES "^(Debug|Release|RelWithDebInfo|MinSizeRel)$")
       CACHE STRING "Choose the type of build." FORCE)
   set_property(CACHE CMAKE_BUILD_TYPE PROPERTY STRINGS "Debug" "Release"
                                                "MinSizeRel" "RelWithDebInfo")
+  message(STATUS "Set BUILD_TESTING to YES and build unit testing package under tests")
+  set(BUILD_TESTING "YES")
 endif()
 
 # Set compiler flags.
@@ -53,10 +56,8 @@ endif()
 find_package(gfsio REQUIRED)
 find_package(sfcio REQUIRED)
 find_package(w3nco REQUIRED)
-find_package(landsfcutil REQUIRED)
 find_package(bacio REQUIRED)
 find_package(nemsio REQUIRED)
-find_package(nemsiogfs REQUIRED)
 find_package(sigio REQUIRED)
 find_package(sp REQUIRED)
 find_package(ip REQUIRED)
@@ -72,6 +73,12 @@ endif()
 
 add_subdirectory(sorc)
 
+# Run unit tests.
+include(CTest)
+if(BUILD_TESTING)
+  add_subdirectory(tests)
+endif()
+
 # If doxygen documentation we enabled, build it.
 if(ENABLE_DOCS)
   find_package(Doxygen REQUIRED)