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Merge branch 'develop' into bugfix/chgres_warn
Fixes ufs-community#736.
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| # UFS_UTILS test workflow. | ||
| # | ||
| # This workflow tests UFS_UTILS with the Intel compiler. | ||
| # | ||
| # Ed Hartnett 12/14/22 | ||
| name: Intel1 | ||
| on: | ||
| push: | ||
| branches: | ||
| - develop | ||
| paths-ignore: | ||
| - README.md | ||
| pull_request: | ||
| branches: | ||
| - develop | ||
| paths-ignore: | ||
| - README.md | ||
|
|
||
| # Use custom shell with -l so .bash_profile is sourced which loads intel/oneapi/setvars.sh | ||
| # without having to do it in manually every step. | ||
| defaults: | ||
| run: | ||
| shell: bash -leo pipefail {0} | ||
|
|
||
| jobs: | ||
| Intel: | ||
| runs-on: ubuntu-latest | ||
| env: | ||
| CC: icc | ||
| FC: ifort | ||
|
|
||
| steps: | ||
|
|
||
| # See https://software.intel.com/content/www/us/en/develop/articles/oneapi-repo-instructions.html | ||
| - name: install-intel | ||
| run: | | ||
| cd /tmp | ||
| wget https://apt.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB | ||
| sudo apt-key add GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB | ||
| rm GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB | ||
| echo "deb https://apt.repos.intel.com/oneapi all main" | sudo tee /etc/apt/sources.list.d/oneAPI.list | ||
| sudo apt-get update | ||
| sudo apt-get install intel-oneapi-dev-utilities intel-oneapi-mpi-devel intel-oneapi-openmp intel-oneapi-compiler-fortran intel-oneapi-compiler-dpcpp-cpp-and-cpp-classic | ||
| echo "source /opt/intel/oneapi/setvars.sh" >> ~/.bash_profile | ||
| - name: cache-netcdf | ||
| id: cache-netcdf | ||
| uses: actions/cache@v2 | ||
| with: | ||
| path: ~/netcdf | ||
| key: Intel-netcdf-c-$4.7.4-{{ runner.os }}-intel3 | ||
|
|
||
| - name: build-hdf5 | ||
| if: steps.cache-netcdf.outputs.cache-hit != 'true' | ||
| run: | | ||
| export CC=mpiicc | ||
| wget https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.7/src/hdf5-1.10.7.tar.gz &> /dev/null | ||
| tar -xzf hdf5-1.10.7.tar.gz | ||
| pushd hdf5-1.10.7 | ||
| ./configure --prefix=${HOME}/netcdf --enable-parallel --disable-tools --disable-fortran --disable-cxx --enable-parallel-tests --disable-shared --disable-shared --enable-static | ||
| make -j2 | ||
| make install | ||
| - name: build-netcdf-c | ||
| if: steps.cache-netcdf.outputs.cache-hit != 'true' | ||
| run: | | ||
| export CC=mpiicc | ||
| export CPPFLAGS=-I${HOME}/netcdf/include | ||
| export LDFLAGS=-L${HOME}/netcdf/lib | ||
| wget https://github.com/Unidata/netcdf-c/archive/refs/tags/v4.7.4.tar.gz &> /dev/null | ||
| tar -xzf v4.7.4.tar.gz | ||
| pushd netcdf-c-4.7.4 | ||
| ./configure --prefix=${HOME}/netcdf --disable-dap --disable-utilities --disable-shared | ||
| make -j2 | ||
| make install | ||
| - name: build-netcdf-fortran | ||
| if: steps.cache-netcdf.outputs.cache-hit != 'true' | ||
| run: | | ||
| export LD_LIBRARY_PATH="$LD_LIBRARY_PATH:${HOME}/netcdf/lib" | ||
| export PATH="${HOME}/netcdf/bin:$PATH" | ||
| export CC=mpiicc | ||
| export FC=mpiifort | ||
| export CPPFLAGS=-I${HOME}/netcdf/include | ||
| export LDFLAGS=-L${HOME}/netcdf/lib | ||
| export LIBS=`nc-config --libs` | ||
| wget https://github.com/Unidata/netcdf-fortran/archive/v4.5.3.tar.gz &> /dev/null | ||
| tar -xzf v4.5.3.tar.gz | ||
| pushd netcdf-fortran-4.5.3 | ||
| ./configure --prefix=${HOME}/netcdf --disable-shared | ||
| make -j2 | ||
| make install | ||
| - name: cache-esmf | ||
| id: cache-esmf | ||
| uses: actions/cache@v2 | ||
| with: | ||
| path: ~/esmf | ||
| key: Intel-esmf-8.2.0-${{ runner.os }}-intel3 | ||
|
|
||
| - name: build-esmf | ||
| if: steps.cache-esmf.outputs.cache-hit != 'true' | ||
| run: | | ||
| pushd ~ | ||
| export ESMF_DIR=~/esmf-ESMF_8_2_0 | ||
| wget https://github.com/esmf-org/esmf/archive/ESMF_8_2_0.tar.gz &> /dev/null | ||
| tar zxf ESMF_8_2_0.tar.gz | ||
| cd esmf-ESMF_8_2_0 | ||
| export ESMF_COMM=intelmpi | ||
| export ESMF_INSTALL_BINDIR=bin | ||
| export ESMF_INSTALL_LIBDIR=lib | ||
| export ESMF_INSTALL_MODDIR=mod | ||
| export ESMF_COMPILER=intel | ||
| export ESMF_INSTALL_PREFIX=~/esmf | ||
| export ESMF_NETCDF=split | ||
| export ESMF_NETCDF_INCLUDE=${HOME}/netcdf/include | ||
| export ESMF_NETCDF_LIBPATH=${HOME}/netcdf/lib | ||
| export ESMF_NETCDF_LIBS="-lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lz" | ||
| make -j2 | ||
| make install | ||
| - name: cache-jasper | ||
| id: cache-jasper | ||
| uses: actions/cache@v2 | ||
| with: | ||
| path: ~/jasper | ||
| key: Intel-jasper-2.0.25-${{ runner.os }}-intel3 | ||
|
|
||
| - name: build-jasper | ||
| if: steps.cache-jasper.outputs.cache-hit != 'true' | ||
| run: | | ||
| wget https://github.com/jasper-software/jasper/archive/version-2.0.25.tar.gz &> /dev/null | ||
| tar zxf version-2.0.25.tar.gz | ||
| cd jasper-version-2.0.25 | ||
| mkdir build-jasper && cd build-jasper | ||
| cmake .. -DCMAKE_INSTALL_PREFIX=~/jasper -DJAS_ENABLE_SHARED=OFF | ||
| make -j2 | ||
| make install | ||
| - name: checkout-nceplibs | ||
| uses: actions/checkout@v2 | ||
| with: | ||
| repository: NOAA-EMC/NCEPLIBS | ||
| path: nceplibs | ||
|
|
||
| - name: cache-nceplibs | ||
| id: cache-nceplibs | ||
| uses: actions/cache@v2 | ||
| with: | ||
| path: ~/nceplibs | ||
| key: Intel-nceplibs-1.4.0-${{ runner.os }}-intel3 | ||
|
|
||
| - name: build-nceplibs | ||
| if: steps.cache-nceplibs.outputs.cache-hit != 'true' | ||
| run: | | ||
| export ESMFMKFILE=~/esmf/lib/esmf.mk | ||
| wget https://github.com/NOAA-EMC/NCEPLIBS/archive/v1.4.0.tar.gz &> /dev/null | ||
| tar zxf v1.4.0.tar.gz | ||
| cd NCEPLIBS-1.4.0 | ||
| mkdir build && cd build | ||
| cmake .. -DCMAKE_PREFIX_PATH='~;~/jasper;~/netcdf' -DCMAKE_INSTALL_PREFIX='~/nceplibs' -DFLAT=ON | ||
| make -j2 | ||
| - name: checkout-ufs-utils | ||
| uses: actions/checkout@v2 | ||
| with: | ||
| path: ufs_utils | ||
| submodules: recursive | ||
|
|
||
| - name: cache-data | ||
| id: cache-data | ||
| uses: actions/cache@v2 | ||
| with: | ||
| path: ~/data | ||
| key: data-1 | ||
|
|
||
| - name: build | ||
| run: | | ||
| export ESMFMKFILE=~/esmf/lib/esmf.mk | ||
| cd ufs_utils | ||
| mkdir build && cd build | ||
| export LD_LIBRARY_PATH="${LD_LIBRARY_PATH}:~/jasper/lib;~/jasper/lib64" | ||
| cmake -DTEST_FILE_DIR=/home/runner/data -DCMAKE_PREFIX_PATH='~;~/jasper;~/nceplibs;~/netcdf' .. | ||
| make -j2 | ||
| - name: test | ||
| run: | | ||
| cd ufs_utils/build | ||
| ctest --rerun-failed --output-on-failure | ||
| - name: cache-data | ||
| if: steps.cache-data.outputs.cache-hit != 'true' | ||
| run: | | ||
| mkdir ~/data | ||
| cp ufs_utils/build/tests/chgres_cube/data/* ~/data | ||
| cp ufs_utils/build/tests/sfc_climo_gen/data/* ~/data | ||
| cp ufs_utils/build/tests/cpld_gridgen/data/* ~/data | ||
| cp ufs_utils/tests/filter_topo/data/* ~/data | ||
| cp ufs_utils/tests/emcsfc_snow2mdl/data/* ~/data | ||
| cp ufs_utils/tests/chgres_cube/data/* ~/data | ||
| ls -l ~/data | ||
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