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Geode-solutions · Sep 6, 2024 · 5d30798 · 5d30798
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Showing 37 changed files with 99 additions and 98 deletions.
diff --git a/bindings/python/requirements.txt b/bindings/python/requirements.txt
@@ -2,5 +2,5 @@
 # This file is autogenerated by pip-compile with Python 3.10
 # by the following command:
 #
-#    pip-compile bindings/python/requirements.in
+#    pip-compile --pre bindings/python/requirements.in
 #
diff --git a/include/geode/basic/attribute.hpp b/include/geode/basic/attribute.hpp
@@ -283,7 +283,8 @@ namespace geode
             set_value( std::move( value ) );
         }
 
-        ConstantAttribute() : ReadOnlyAttribute< T >( AttributeProperties{} ){};
+        ConstantAttribute()
+            : ReadOnlyAttribute< T >( AttributeProperties{} ) {};
 
         template < typename Archive >
         void serialize( Archive& archive )
@@ -425,7 +426,8 @@ namespace geode
             values_.reserve( 10 );
         }
 
-        VariableAttribute() : ReadOnlyAttribute< T >( AttributeProperties{} ){};
+        VariableAttribute()
+            : ReadOnlyAttribute< T >( AttributeProperties{} ) {};
 
         template < typename Archive >
         void serialize( Archive& archive )
@@ -620,7 +622,7 @@ namespace geode
         }
 
         VariableAttribute()
-            : ReadOnlyAttribute< bool >( AttributeProperties{} ){};
+            : ReadOnlyAttribute< bool >( AttributeProperties{} ) {};
 
         template < typename Archive >
         void serialize( Archive& archive )
@@ -819,7 +821,7 @@ namespace geode
             values_.reserve( 10 );
         }
 
-        SparseAttribute() : ReadOnlyAttribute< T >( AttributeProperties{} ){};
+        SparseAttribute() : ReadOnlyAttribute< T >( AttributeProperties{} ) {};
 
         template < typename Archive >
         void serialize( Archive& archive )

diff --git a/include/geode/model/mixin/builder/topology_builder.hpp b/include/geode/model/mixin/builder/topology_builder.hpp
@@ -39,6 +39,6 @@ namespace geode
     protected:
         explicit TopologyBuilder( Topology& topology )
             : RelationshipsBuilder( topology ),
-              VertexIdentifierBuilder( topology ){};
+              VertexIdentifierBuilder( topology ) {};
     };
 } // namespace geode
diff --git a/src/geode/basic/cell_array.cpp b/src/geode/basic/cell_array.cpp
@@ -134,8 +134,8 @@ namespace geode
     CellArray< dimension >::CellArray( CellArray&& ) noexcept = default;
 
     template < index_t dimension >
-    auto CellArray< dimension >::operator=( CellArray&& ) noexcept
-        -> CellArray& = default;
+    auto CellArray< dimension >::operator=(
+        CellArray&& ) noexcept -> CellArray& = default;
 
     template < index_t dimension >
     CellArray< dimension >::~CellArray() = default;

diff --git a/src/geode/geometry/basic_objects/circle.cpp b/src/geode/geometry/basic_objects/circle.cpp
@@ -100,8 +100,8 @@ namespace geode
     }
     Circle::Circle( const Circle& ) = default;
     Circle::Circle( const OwnerCircle& other )
-        : Base(
-            { other.plane().normal(), other.plane().origin() }, other.radius() )
+        : Base( { other.plane().normal(), other.plane().origin() },
+              other.radius() )
     {
     }
     Circle& Circle::operator=( const Circle& ) = default;

diff --git a/src/geode/geometry/basic_objects/infinite_line.cpp b/src/geode/geometry/basic_objects/infinite_line.cpp
@@ -78,7 +78,7 @@ namespace geode
     OwnerInfiniteLine< dimension >::OwnerInfiniteLine(
         const Segment< dimension >& segment )
         : OwnerInfiniteLine(
-            segment.normalized_direction(), segment.vertices()[0] )
+              segment.normalized_direction(), segment.vertices()[0] )
     {
     }
     template < index_t dimension >

diff --git a/src/geode/geometry/basic_objects/tetrahedron.cpp b/src/geode/geometry/basic_objects/tetrahedron.cpp
@@ -104,9 +104,9 @@ namespace geode
     Tetrahedron::Tetrahedron( const Tetrahedron& other ) noexcept = default;
     Tetrahedron::Tetrahedron( const OwnerTetrahedron& other ) noexcept
         : Base( other.vertices()[0],
-            other.vertices()[1],
-            other.vertices()[2],
-            other.vertices()[3] )
+              other.vertices()[1],
+              other.vertices()[2],
+              other.vertices()[3] )
     {
     }
     Tetrahedron& Tetrahedron::operator=(

diff --git a/src/geode/image/core/raster_image.cpp b/src/geode/image/core/raster_image.cpp
@@ -109,8 +109,8 @@ namespace geode
     }
 
     template < index_t dimension >
-    auto RasterImage< dimension >::cell_indices( index_t index ) const
-        -> CellIndices
+    auto RasterImage< dimension >::cell_indices(
+        index_t index ) const -> CellIndices
     {
         return impl_->cell_indices( *this, index );
     }

diff --git a/src/geode/mesh/builder/geode/geode_edged_curve_builder.cpp b/src/geode/mesh/builder/geode/geode_edged_curve_builder.cpp
@@ -34,7 +34,7 @@ namespace geode
     OpenGeodeEdgedCurveBuilder< dimension >::OpenGeodeEdgedCurveBuilder(
         VertexSet& vertex_set, MeshBuilderFactoryKey )
         : OpenGeodeEdgedCurveBuilder< dimension >(
-            dynamic_cast< OpenGeodeEdgedCurve< dimension >& >( vertex_set ) )
+              dynamic_cast< OpenGeodeEdgedCurve< dimension >& >( vertex_set ) )
     {
     }
 

diff --git a/src/geode/mesh/builder/geode/geode_hybrid_solid_builder.cpp b/src/geode/mesh/builder/geode/geode_hybrid_solid_builder.cpp
@@ -34,7 +34,7 @@ namespace geode
     OpenGeodeHybridSolidBuilder< dimension >::OpenGeodeHybridSolidBuilder(
         VertexSet& vertex_set, MeshBuilderFactoryKey )
         : OpenGeodeHybridSolidBuilder< dimension >(
-            dynamic_cast< OpenGeodeHybridSolid< dimension >& >( vertex_set ) )
+              dynamic_cast< OpenGeodeHybridSolid< dimension >& >( vertex_set ) )
     {
     }
 

diff --git a/src/geode/mesh/builder/geode/geode_point_set_builder.cpp b/src/geode/mesh/builder/geode/geode_point_set_builder.cpp
@@ -34,7 +34,7 @@ namespace geode
     OpenGeodePointSetBuilder< dimension >::OpenGeodePointSetBuilder(
         VertexSet& vertex_set, MeshBuilderFactoryKey )
         : OpenGeodePointSetBuilder< dimension >(
-            dynamic_cast< OpenGeodePointSet< dimension >& >( vertex_set ) )
+              dynamic_cast< OpenGeodePointSet< dimension >& >( vertex_set ) )
     {
     }
 

diff --git a/src/geode/mesh/builder/geode/geode_polygonal_surface_builder.cpp b/src/geode/mesh/builder/geode/geode_polygonal_surface_builder.cpp
@@ -35,8 +35,8 @@ namespace geode
         dimension >::OpenGeodePolygonalSurfaceBuilder( VertexSet& vertex_set,
         MeshBuilderFactoryKey )
         : OpenGeodePolygonalSurfaceBuilder< dimension >(
-            dynamic_cast< OpenGeodePolygonalSurface< dimension >& >(
-                vertex_set ) )
+              dynamic_cast< OpenGeodePolygonalSurface< dimension >& >(
+                  vertex_set ) )
     {
     }
 

diff --git a/src/geode/mesh/builder/geode/geode_polyhedral_solid_builder.cpp b/src/geode/mesh/builder/geode/geode_polyhedral_solid_builder.cpp
@@ -35,8 +35,8 @@ namespace geode
         dimension >::OpenGeodePolyhedralSolidBuilder( VertexSet& vertex_set,
         MeshBuilderFactoryKey )
         : OpenGeodePolyhedralSolidBuilder< dimension >(
-            dynamic_cast< OpenGeodePolyhedralSolid< dimension >& >(
-                vertex_set ) )
+              dynamic_cast< OpenGeodePolyhedralSolid< dimension >& >(
+                  vertex_set ) )
     {
     }
 

diff --git a/src/geode/mesh/builder/geode/geode_regular_grid_solid_builder.cpp b/src/geode/mesh/builder/geode/geode_regular_grid_solid_builder.cpp
@@ -33,7 +33,7 @@ namespace geode
     OpenGeodeRegularGridBuilder< 3 >::OpenGeodeRegularGridBuilder(
         VertexSet& vertex_set, MeshBuilderFactoryKey )
         : OpenGeodeRegularGridBuilder< 3 >(
-            dynamic_cast< OpenGeodeRegularGrid< 3 >& >( vertex_set ) )
+              dynamic_cast< OpenGeodeRegularGrid< 3 >& >( vertex_set ) )
     {
     }
 

diff --git a/src/geode/mesh/builder/geode/geode_regular_grid_surface_builder.cpp b/src/geode/mesh/builder/geode/geode_regular_grid_surface_builder.cpp
@@ -33,7 +33,7 @@ namespace geode
     OpenGeodeRegularGridBuilder< 2 >::OpenGeodeRegularGridBuilder(
         VertexSet& vertex_set, MeshBuilderFactoryKey )
         : OpenGeodeRegularGridBuilder< 2 >(
-            dynamic_cast< OpenGeodeRegularGrid< 2 >& >( vertex_set ) )
+              dynamic_cast< OpenGeodeRegularGrid< 2 >& >( vertex_set ) )
     {
     }
 

diff --git a/src/geode/mesh/builder/geode/geode_tetrahedral_solid_builder.cpp b/src/geode/mesh/builder/geode/geode_tetrahedral_solid_builder.cpp
@@ -35,8 +35,8 @@ namespace geode
         dimension >::OpenGeodeTetrahedralSolidBuilder( VertexSet& vertex_set,
         MeshBuilderFactoryKey )
         : OpenGeodeTetrahedralSolidBuilder< dimension >(
-            dynamic_cast< OpenGeodeTetrahedralSolid< dimension >& >(
-                vertex_set ) )
+              dynamic_cast< OpenGeodeTetrahedralSolid< dimension >& >(
+                  vertex_set ) )
     {
     }
 

diff --git a/src/geode/mesh/builder/geode/geode_triangulated_surface_builder.cpp b/src/geode/mesh/builder/geode/geode_triangulated_surface_builder.cpp
@@ -35,8 +35,8 @@ namespace geode
         dimension >::OpenGeodeTriangulatedSurfaceBuilder( VertexSet& vertex_set,
         MeshBuilderFactoryKey )
         : OpenGeodeTriangulatedSurfaceBuilder< dimension >(
-            dynamic_cast< OpenGeodeTriangulatedSurface< dimension >& >(
-                vertex_set ) )
+              dynamic_cast< OpenGeodeTriangulatedSurface< dimension >& >(
+                  vertex_set ) )
     {
     }
 

diff --git a/src/geode/mesh/builder/geode/geode_vertex_set_builder.cpp b/src/geode/mesh/builder/geode/geode_vertex_set_builder.cpp
@@ -31,7 +31,7 @@ namespace geode
     OpenGeodeVertexSetBuilder::OpenGeodeVertexSetBuilder(
         VertexSet& vertex_set, MeshBuilderFactoryKey )
         : OpenGeodeVertexSetBuilder(
-            dynamic_cast< OpenGeodeVertexSet& >( vertex_set ) )
+              dynamic_cast< OpenGeodeVertexSet& >( vertex_set ) )
     {
     }
 

diff --git a/src/geode/mesh/core/graph.cpp b/src/geode/mesh/core/graph.cpp
@@ -45,10 +45,10 @@ namespace geode
     public:
         explicit Impl( Graph& graph )
             : edges_around_vertex_(
-                graph.vertex_attribute_manager()
-                    .template find_or_create_attribute< VariableAttribute,
-                        EdgesAroundVertex >(
-                        ATTRIBUTE_NAME, EdgesAroundVertex{} ) )
+                  graph.vertex_attribute_manager()
+                      .template find_or_create_attribute< VariableAttribute,
+                          EdgesAroundVertex >(
+                          ATTRIBUTE_NAME, EdgesAroundVertex{} ) )
         {
         }
 

diff --git a/src/geode/mesh/core/grid.cpp b/src/geode/mesh/core/grid.cpp
@@ -524,8 +524,8 @@ namespace geode
     }
 
     template < index_t dimension >
-    auto Grid< dimension >::cell_vertices( const CellIndices& cell_id ) const
-        -> CellVertices
+    auto Grid< dimension >::cell_vertices(
+        const CellIndices& cell_id ) const -> CellVertices
     {
         return impl_->cell_vertices( cell_id );
     }
@@ -572,15 +572,15 @@ namespace geode
     }
 
     template < index_t dimension >
-    auto Grid< dimension >::cells( const Point< dimension >& query ) const
-        -> CellsAroundVertex
+    auto Grid< dimension >::cells(
+        const Point< dimension >& query ) const -> CellsAroundVertex
     {
         return impl_->cells( *this, query );
     }
 
     template < index_t dimension >
-    auto Grid< dimension >::cells_around( VertexIndices vertex_indices ) const
-        -> CellsAroundVertex
+    auto Grid< dimension >::cells_around(
+        VertexIndices vertex_indices ) const -> CellsAroundVertex
     {
         return impl_->cells_around( *this, vertex_indices );
     }

diff --git a/src/geode/mesh/core/light_regular_grid.cpp b/src/geode/mesh/core/light_regular_grid.cpp
@@ -122,8 +122,8 @@ namespace geode
     }
 
     template < index_t dimension >
-    auto LightRegularGrid< dimension >::vertex_indices( index_t index ) const
-        -> VertexIndices
+    auto LightRegularGrid< dimension >::vertex_indices(
+        index_t index ) const -> VertexIndices
     {
         return impl_->vertex_indices( *this, index );
     }
@@ -136,8 +136,8 @@ namespace geode
     }
 
     template < index_t dimension >
-    auto LightRegularGrid< dimension >::cell_indices( index_t index ) const
-        -> CellIndices
+    auto LightRegularGrid< dimension >::cell_indices(
+        index_t index ) const -> CellIndices
     {
         return impl_->cell_indices( *this, index );
     }

diff --git a/src/geode/mesh/core/solid_mesh.cpp b/src/geode/mesh/core/solid_mesh.cpp
@@ -413,10 +413,10 @@ namespace geode
     public:
         explicit Impl( SolidMesh& solid )
             : polyhedron_around_vertex_(
-                solid.vertex_attribute_manager()
-                    .template find_or_create_attribute< VariableAttribute,
-                        PolyhedronVertex >(
-                        "polyhedron_around_vertex", PolyhedronVertex{} ) ),
+                  solid.vertex_attribute_manager()
+                      .template find_or_create_attribute< VariableAttribute,
+                          PolyhedronVertex >(
+                          "polyhedron_around_vertex", PolyhedronVertex{} ) ),
               polyhedra_around_vertex_(
                   solid.vertex_attribute_manager()
                       .template find_or_create_attribute< VariableAttribute,

diff --git a/src/geode/mesh/core/surface_mesh.cpp b/src/geode/mesh/core/surface_mesh.cpp
@@ -274,10 +274,10 @@ namespace geode
     public:
         Impl( SurfaceMesh& surface )
             : polygon_around_vertex_(
-                surface.vertex_attribute_manager()
-                    .template find_or_create_attribute< VariableAttribute,
-                        PolygonVertex >(
-                        "polygon_around_vertex", PolygonVertex{} ) ),
+                  surface.vertex_attribute_manager()
+                      .template find_or_create_attribute< VariableAttribute,
+                          PolygonVertex >(
+                          "polygon_around_vertex", PolygonVertex{} ) ),
               polygons_around_vertex_(
                   surface.vertex_attribute_manager()
                       .template find_or_create_attribute< VariableAttribute,

diff --git a/src/geode/mesh/helpers/detail/component_identifier.cpp b/src/geode/mesh/helpers/detail/component_identifier.cpp
@@ -194,7 +194,7 @@ namespace geode
         public:
             explicit Impl( const EdgedCurve< dimension >& curve )
                 : Propagator< EdgedCurve< dimension > >(
-                    curve, curve.nb_edges() )
+                      curve, curve.nb_edges() )
             {
             }
 
@@ -256,7 +256,7 @@ namespace geode
         public:
             explicit Impl( const SurfaceMesh< dimension >& surface )
                 : Propagator< SurfaceMesh< dimension > >(
-                    surface, surface.nb_polygons() )
+                      surface, surface.nb_polygons() )
             {
             }
 

diff --git a/src/geode/mesh/helpers/detail/curve_merger.cpp b/src/geode/mesh/helpers/detail/curve_merger.cpp
@@ -209,8 +209,8 @@ namespace geode
         }
 
         template < index_t dimension >
-        auto EdgedCurveMerger< dimension >::edge_origins( index_t edge ) const
-            -> const EdgeOrigins&
+        auto EdgedCurveMerger< dimension >::edge_origins(
+            index_t edge ) const -> const EdgeOrigins&
         {
             return impl_->edge_origins( edge );
         }

diff --git a/src/geode/mesh/helpers/detail/vertex_merger.cpp b/src/geode/mesh/helpers/detail/vertex_merger.cpp
@@ -178,8 +178,8 @@ namespace geode
         }
 
         template < typename Mesh >
-        auto VertexMerger< Mesh >::vertex_origins( index_t vertex ) const
-            -> const VertexOrigins&
+        auto VertexMerger< Mesh >::vertex_origins(
+            index_t vertex ) const -> const VertexOrigins&
         {
             return impl_->vertex_origins( vertex );
         }

diff --git a/src/geode/model/helpers/simplicial_brep_creator.cpp b/src/geode/model/helpers/simplicial_brep_creator.cpp
@@ -41,7 +41,7 @@ namespace geode
     public:
         Impl( BRep& brep, std::vector< Point3D > unique_points )
             : internal::SimplicialModelCreator< BRep >(
-                brep, std::move( unique_points ) )
+                  brep, std::move( unique_points ) )
         {
         }
 

diff --git a/src/geode/model/helpers/simplicial_section_creator.cpp b/src/geode/model/helpers/simplicial_section_creator.cpp
@@ -37,7 +37,7 @@ namespace geode
     public:
         Impl( Section& section, std::vector< Point2D > unique_points )
             : internal::SimplicialModelCreator< Section >(
-                section, std::move( unique_points ) )
+                  section, std::move( unique_points ) )
         {
         }
 

diff --git a/src/geode/model/mixin/core/block.cpp b/src/geode/model/mixin/core/block.cpp
@@ -61,7 +61,7 @@ namespace geode
     template < index_t dimension >
     Block< dimension >::Block()
         : Block( MeshFactory::default_impl(
-            PolyhedralSolid< dimension >::type_name_static() ) )
+              PolyhedralSolid< dimension >::type_name_static() ) )
     {
     }
 

diff --git a/src/geode/model/mixin/core/blocks.cpp b/src/geode/model/mixin/core/blocks.cpp
@@ -61,8 +61,8 @@ namespace geode
     Blocks< dimension >::~Blocks() = default;
 
     template < index_t dimension >
-    auto Blocks< dimension >::operator=( Blocks&& ) noexcept
-        -> Blocks& = default;
+    auto Blocks< dimension >::operator=(
+        Blocks&& ) noexcept -> Blocks& = default;
 
     template < index_t dimension >
     index_t Blocks< dimension >::nb_blocks() const

diff --git a/src/geode/model/mixin/core/corner.cpp b/src/geode/model/mixin/core/corner.cpp
@@ -119,8 +119,8 @@ namespace geode
     }
 
     template < index_t dimension >
-    auto Corner< dimension >::modifiable_mesh( CornersBuilderKey /*unused*/ )
-        -> Mesh&
+    auto Corner< dimension >::modifiable_mesh(
+        CornersBuilderKey /*unused*/ ) -> Mesh&
     {
         return modifiable_mesh();
     }