Brief Introduction to Hyperspectral Image Analysis.
This introduction was presented at the Phenome Digital Phenotyping Workshop at Phenome 2020 in Tucson, AZ on Monday, February 24, 2020.
Authors: Alina Zare, Taylor Glenn, and Susan Meerdink
Please reference this work if any part of it is used elsewhere:
A. Zare, T. Glenn and S. Meerdink. (2020, February 26). GatorSense/HyperspectralAnalysisIntroduction v0.4 (Version v0.4). Zenodo. http://doi.org/10.5281/zenodo.3688795
The introduction material was placed into four (Python 3) Jupyter notebooks:
- HSI Intro.ipynb
- Unmixing.ipynb
- Target Detection.ipynb
- Classification.ipynb
The file requirements.txt gives all of the package dependencies for the Python environment. You should be able to install them with the command:
> pip install -r requirements.txt
We recommend using a virtual environment to install and run the python packages. Installation instructions using a virtualenv:
> python3 -m venv hsienv
> source hsienv/bin/activate
> pip install Cython
> pip install -r requirements.txt
Start jupyter:
> jupyter notebook
To exit the virtualenv when finished run:
> deactivate