Spatial smoothing algorithm in Dynsight #32
Merged
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
andrewtarzia
requested changes
Sep 20, 2024
|
Almost there, a few unresolved conversations above. |
| @@ -84,7 +83,7 @@ def spatialaverage( | |||
| universe: | |||
| The MDAnalysis `Universe` object containing the molecular dynamics | |||
| simulation data, including atom positions and trajectory. | |||
| array_path: | |||
| descriptor_array: | |||
| Path to the file containing the NumPy array of descriptor values. | |||
andrewtarzia
approved these changes
Sep 23, 2024
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
With this pull request I want to add the spatial smoothing parallelized algorithm.
In brief, this code can be useful when the user wants to average the value of a collective variable of a particle with the values of its neighboring particles, defined by a cutoff distance.