Add alignments track option to 'Hide small indels (less than 10bp)' #4733
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This is something that occurs during long read sequencing a lot
It's hard to find the right balance of what the best behavior is for this setting is as "hifi" reads don't suffer a lot of indels, so it might not make sense to automatically toggle it on, but
for CLR/nanopore where there are a lot of indels, the track can look like this zoomed out
but with hide indels turned on, cleans it up a bit...
other options include using subpixel rendering so it automatically toggles off at zoomed out scales, this is possible by manually editing the renderer config (
minSubfeatureWidth
) which could also be exposed via track menu potentiallyanother option is the 'quick consensus mode' (#4292) but that's a bit trickier. kinda involves calculating snpcoverage type settings, and uses that to inform pileup rendering