Fix filter functionality on pileup tracks

[cmdcolin]

The optimization for filterBy caused the filter reads function to break in the pileup track. This restores functionality by

1. Using readName instead of name in the filter by read name function
2. Recreating the layout after a filterBy is applied
3. Serializing a clone of the filterBy object to make sure it gets recognized by observability systems when it is updated

[codecov]

Codecov Report

Merging #2965 (ebecc53) into main (8b9d869) will increase coverage by 0.01%.
The diff coverage is 71.42%.

@@            Coverage Diff             @@
##             main    #2965      +/-   ##
==========================================
+ Coverage   60.67%   60.68%   +0.01%     
==========================================
  Files         601      601              
  Lines       27342    27345       +3     
  Branches     6654     6656       +2     
==========================================
+ Hits        16589    16594       +5     
+ Misses      10442    10441       -1     
+ Partials      311      310       -1     

Impacted Files	Coverage Δ
...lugins/alignments/src/LinearPileupDisplay/model.ts	64.97% <ø> (ø)
plugins/alignments/src/CramAdapter/CramAdapter.ts	83.94% <33.33%> (-0.62%)	⬇️
plugins/alignments/src/BamAdapter/BamAdapter.ts	72.97% <100.00%> (ø)
...ments/src/LinearSNPCoverageDisplay/models/model.ts	63.15% <100.00%> (+0.39%)	⬆️
...ignments/src/PileupRenderer/PileupLayoutSession.ts	100.00% <100.00%> (ø)
...ckages/core/pluggableElementTypes/RpcMethodType.ts	85.41% <0.00%> (+2.08%)	⬆️
...quenceRenderer/components/DivSequenceRendering.tsx	94.68% <0.00%> (+2.12%)	⬆️

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