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Opening a local file BAM track fails on desktop #1344

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cmdcolin opened this issue Oct 27, 2020 · 4 comments · Fixed by #1505
Closed

Opening a local file BAM track fails on desktop #1344

cmdcolin opened this issue Oct 27, 2020 · 4 comments · Fixed by #1505
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@cmdcolin
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Results in error "An object could not be cloned" in bai readFile it seems

Ref https://files.gitter.im/5c59cb65d73408ce4fb6f58e/WBxj/02.png

Reported by @moldach
@cmdcolin cmdcolin added the bug Something isn't working label Oct 27, 2020
@cmdcolin
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Random tiny empty bam you can open on hg19

tinybam.zip

@cmdcolin
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Note that cram does not throw a similar error interestingly

@cmdcolin
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This is technically the same bug as #1315

@moldach
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moldach commented Oct 28, 2020

Note that cram does not throw a similar error interestingly

As long as the .cram and index (.cram.crai) are available I can confirm it worked for me

@cmdcolin cmdcolin mentioned this issue Nov 29, 2020
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Fix loading of local files in jbrowse-desktop GMOD/jbrowse-components
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@moldach @cmdcolin