Fix tsc

GMOD · Aug 10, 2021 · b5c5ba0 · b5c5ba0
1 parent 14f7690
commit b5c5ba0
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Showing 3 changed files with 33 additions and 10 deletions.
diff --git a/packages/core/rpc/coreRpcMethods.ts b/packages/core/rpc/coreRpcMethods.ts
@@ -114,6 +114,7 @@ export class CoreGetFeatures extends RpcMethodType {
       region: Region
       adapterConfig: {}
       signal?: RemoteAbortSignal
+      // eslint-disable-next-line @typescript-eslint/no-explicit-any
       opts?: any
     },
     rpcDriverClassName: string,

diff --git a/plugins/sequence/src/IndexedFastaAdapter/IndexedFastaAdapter.ts b/plugins/sequence/src/IndexedFastaAdapter/IndexedFastaAdapter.ts
@@ -45,11 +45,11 @@ export default class extends BaseFeatureDataAdapter implements SequenceAdapter {
     this.fasta = new IndexedFasta(fastaOpts)
   }
 
-  public getRefNames(opts: BaseOptions) {
+  public getRefNames(opts?: BaseOptions) {
     return this.fasta.getSequenceNames(opts)
   }
 
-  public async getRegions(opts: BaseOptions): Promise<NoAssemblyRegion[]> {
+  public async getRegions(opts?: BaseOptions): Promise<NoAssemblyRegion[]> {
     const seqSizes = await this.fasta.getSequenceSizes(opts)
     return Object.keys(seqSizes).map(
       (refName): NoAssemblyRegion => ({
@@ -65,7 +65,7 @@ export default class extends BaseFeatureDataAdapter implements SequenceAdapter {
    * @param param -
    * @returns Observable of Feature objects in the region
    */
-  public getFeatures(region: NoAssemblyRegion, opts: BaseOptions) {
+  public getFeatures(region: NoAssemblyRegion, opts?: BaseOptions) {
     const { refName, start, end } = region
     return ObservableCreate<Feature>(async observer => {
       const size = await this.fasta.getSequenceSize(refName, opts)

diff --git a/yarn.lock b/yarn.lock
@@ -3047,6 +3047,21 @@
   dependencies:
     "@librpc/ee" "1.0.4"
 
+"@mapbox/node-pre-gyp@^1.0.0":
+  version "1.0.5"
+  resolved "https://registry.yarnpkg.com/@mapbox/node-pre-gyp/-/node-pre-gyp-1.0.5.tgz#2a0b32fcb416fb3f2250fd24cb2a81421a4f5950"
+  integrity sha512-4srsKPXWlIxp5Vbqz5uLfBN+du2fJChBoYn/f2h991WLdk7jUvcSk/McVLSv/X+xQIPI8eGD5GjrnygdyHnhPA==
+  dependencies:
+    detect-libc "^1.0.3"
+    https-proxy-agent "^5.0.0"
+    make-dir "^3.1.0"
+    node-fetch "^2.6.1"
+    nopt "^5.0.0"
+    npmlog "^4.1.2"
+    rimraf "^3.0.2"
+    semver "^7.3.4"
+    tar "^6.1.0"
+
 "@material-ui/core@^4.12.2":
   version "4.12.2"
   resolved "https://registry.yarnpkg.com/@material-ui/core/-/core-4.12.2.tgz#59a8b19f16b8c218d912f37f5ae70473c3c82c73"
@@ -9172,11 +9187,6 @@ dotenv@8.2.0, dotenv@^8.0.0, dotenv@^8.2.0:
   resolved "https://registry.yarnpkg.com/dotenv/-/dotenv-8.2.0.tgz#97e619259ada750eea3e4ea3e26bceea5424b16a"
   integrity sha512-8sJ78ElpbDJBHNeBzUbUVLsqKdccaa/BXF1uPTw3GrvQTBgrQrtObr2mUrE38vzYd8cEv+m/JBfDLioYcfXoaw==
 
-dotenv@^10.0.0:
-  version "10.0.0"
-  resolved "https://registry.yarnpkg.com/dotenv/-/dotenv-10.0.0.tgz#3d4227b8fb95f81096cdd2b66653fb2c7085ba81"
-  integrity sha512-rlBi9d8jpv9Sf1klPjNfFAuWDjKLwTIJJ/VxtoTwIR6hnZxcEOQCZg2oIL3MWBYw5GpUDKOEnND7LXTbIpQ03Q==
-
 dotenv@^6.2.0:
   version "6.2.0"
   resolved "https://registry.yarnpkg.com/dotenv/-/dotenv-6.2.0.tgz#941c0410535d942c8becf28d3f357dbd9d476064"
@@ -15795,7 +15805,7 @@ npm-run-path@^4.0.0:
   dependencies:
     path-key "^3.0.0"
 
-npmlog@^4.0.2, npmlog@^4.1.2:
+npmlog@^4.1.2:
   version "4.1.2"
   resolved "https://registry.yarnpkg.com/npmlog/-/npmlog-4.1.2.tgz#08a7f2a8bf734604779a9efa4ad5cc717abb954b"
   integrity sha512-2uUqazuKlTaSI/dC8AzicUck7+IrEaOnN/e0jd3Xtt1KcGpwx30v50mL7oPyr/h9bL3E4aZccVwpwP+5W9Vjkg==
@@ -20469,7 +20479,7 @@ tar-stream@^2.0.0:
     inherits "^2.0.3"
     readable-stream "^3.1.1"
 
-tar@^4, tar@^4.4.10, tar@^4.4.12, tar@^4.4.8:
+tar@^4.4.10, tar@^4.4.12, tar@^4.4.8:
   version "4.4.13"
   resolved "https://registry.yarnpkg.com/tar/-/tar-4.4.13.tgz#43b364bc52888d555298637b10d60790254ab525"
   integrity sha512-w2VwSrBoHa5BsSyH+KxEqeQBAllHhccyMFVHtGtdMpF4W7IRWfZjFiQceJPChOeTsSDVUpER2T8FA93pr0L+QA==
@@ -20494,6 +20504,18 @@ tar@^6.0.0, tar@^6.0.2:
     mkdirp "^1.0.3"
     yallist "^4.0.0"
 
+tar@^6.1.0:
+  version "6.1.7"
+  resolved "https://registry.yarnpkg.com/tar/-/tar-6.1.7.tgz#c566d1107d38b09e92983a68db5534fc7f6cab42"
+  integrity sha512-PBoRkOJU0X3lejJ8GaRCsobjXTgFofRDSPdSUhRSdlwJfifRlQBwGXitDItdGFu0/h0XDMCkig0RN1iT7DBxhA==
+  dependencies:
+    chownr "^2.0.0"
+    fs-minipass "^2.0.0"
+    minipass "^3.0.0"
+    minizlib "^2.1.1"
+    mkdirp "^1.0.3"
+    yallist "^4.0.0"
+
 telejson@^5.3.2:
   version "5.3.3"
   resolved "https://registry.yarnpkg.com/telejson/-/telejson-5.3.3.tgz#fa8ca84543e336576d8734123876a9f02bf41d2e"