Typ file

plugins/variants/src/MultiLinearVariantDisplay/model.ts

@@ -9,7 +9,7 @@ import { isAlive, types } from 'mobx-state-tree'
 
 import { randomColor } from '../util'
 
-import type { Source } from '../util'
+import type { Source } from '../types'
 import type PluginManager from '@jbrowse/core/PluginManager'
 import type { AnyConfigurationSchemaType } from '@jbrowse/core/configuration'
 import type { AnyReactComponentType, Feature } from '@jbrowse/core/util'

plugins/variants/src/MultiLinearVariantMatrixDisplay/model.ts

@@ -10,7 +10,7 @@ import { isAlive, types } from 'mobx-state-tree'
 
 import { randomColor } from '../util'
 
-import type { Source } from '../util'
+import type { Source } from '../types'
 import type { AnyConfigurationSchemaType } from '@jbrowse/core/configuration'
 import type { Feature } from '@jbrowse/core/util'
 import type { ExportSvgDisplayOptions } from '@jbrowse/plugin-linear-genome-view'

plugins/variants/src/MultiLinearVariantMatrixRenderer/LinearVariantMatrixRenderer.ts

@@ -3,7 +3,7 @@ import { SimpleFeature, renderToAbstractCanvas } from '@jbrowse/core/util'
 
 import { getCol } from '../util'
 
-import type { Source } from '../util'
+import type { Source } from '../types'
 import type { RenderArgsDeserialized as BoxRenderArgsDeserialized } from '@jbrowse/core/pluggableElementTypes/renderers/BoxRendererType'
 import type { Feature } from '@jbrowse/core/util'
 

plugins/variants/src/MultiLinearVariantRenderer/MultiVariantRenderer.ts

@@ -4,7 +4,7 @@ import { featureSpanPx, renderToAbstractCanvas } from '@jbrowse/core/util'
 // locals
 import { getCol } from '../util'
 
-import type { Source } from '../util'
+import type { Source } from '../types'
 import type { RenderArgsDeserialized as FeatureRenderArgsDeserialized } from '@jbrowse/core/pluggableElementTypes/renderers/FeatureRendererType'
 import type { Feature } from '@jbrowse/core/util'
 import type { ThemeOptions } from '@mui/material'

plugins/variants/src/MultiLinearVariantRenderer/MultiVariantRendering.tsx

@@ -3,7 +3,7 @@ import { useRef } from 'react'
 import { PrerenderedCanvas } from '@jbrowse/core/ui'
 import { observer } from 'mobx-react'
 
-import type { Source } from '../util'
+import type { Source } from '../types'
 import type { Feature } from '@jbrowse/core/util'
 import type { Region } from '@jbrowse/core/util/types'
 

plugins/variants/src/MultiVariantBaseRenderer.ts

@@ -1,7 +1,7 @@
 import FeatureRendererType from '@jbrowse/core/pluggableElementTypes/renderers/FeatureRendererType'
 import { renderToAbstractCanvas } from '@jbrowse/core/util'
 
-import type { Source } from './util'
+import type { Source } from './types'
 import type { RenderArgsDeserialized as FeatureRenderArgsDeserialized } from '@jbrowse/core/pluggableElementTypes/renderers/FeatureRendererType'
 import type { Feature } from '@jbrowse/core/util'
 import type { ThemeOptions } from '@mui/material'

plugins/variants/src/StructuralVariantChordRenderer/Chord.tsx

@@ -7,27 +7,7 @@ import { observer } from 'mobx-react'
 
 import type { AnyConfigurationModel } from '@jbrowse/core/configuration'
 import type { Feature } from '@jbrowse/core/util'
-
-export interface Region {
-  end: number
-  start: number
-  refName: string
-  elided?: false
-}
-
-export interface ElidedRegion {
-  elided: true
-  regions: Region[]
-}
-
-export type AnyRegion = Region | ElidedRegion
-
-export interface Block {
-  flipped: boolean
-  bpPerRadian: number
-  startRadians: number
-  region: AnyRegion
-}
+import type { AnyRegion, Block } from './types'
 
 function bpToRadians(block: Block, pos: number) {
   const blockStart = block.region.elided ? 0 : block.region.start

plugins/variants/src/StructuralVariantChordRenderer/ReactComponent.tsx

@@ -4,7 +4,7 @@ import { observer } from 'mobx-react'
 
 import Chord from './Chord'
 
-import type { AnyRegion, Block } from './Chord'
+import type { AnyRegion, Block } from './types'
 import type { AnyConfigurationModel } from '@jbrowse/core/configuration'
 import type { Feature } from '@jbrowse/core/util'
 

plugins/variants/src/StructuralVariantChordRenderer/types.ts

@@ -0,0 +1,20 @@
+export interface Region {
+  end: number
+  start: number
+  refName: string
+  elided?: false
+}
+
+export interface ElidedRegion {
+  elided: true
+  regions: Region[]
+}
+
+export type AnyRegion = Region | ElidedRegion
+
+export interface Block {
+  flipped: boolean
+  bpPerRadian: number
+  startRadians: number
+  region: AnyRegion
+}

plugins/variants/src/shared/BulkEditPanel.tsx

@@ -3,8 +3,7 @@ import { useState } from 'react'
 import { ErrorMessage } from '@jbrowse/core/ui'
 import { Button, TextField, Typography } from '@mui/material'
 import { makeStyles } from 'tss-react/mui'
-
-import { type Source } from '../util'
+import { Source } from '../types'
 
 const useStyles = makeStyles()({
   textAreaFont: {

plugins/variants/src/shared/ClusterDialog.tsx

@@ -19,7 +19,7 @@ import { saveAs } from 'file-saver'
 import { isAlive } from 'mobx-state-tree'
 import { makeStyles } from 'tss-react/mui'
 
-import type { Source } from '../util'
+import type { Source } from '../types'
 import type { AnyConfigurationModel } from '@jbrowse/core/configuration'
 import type { LinearGenomeViewModel } from '@jbrowse/plugin-linear-genome-view'
 

plugins/variants/src/shared/ColorLegend.tsx

@@ -5,7 +5,7 @@ import { observer } from 'mobx-react'
 
 import RectBg from './RectBg'
 
-import type { Source } from '../util'
+import type { Source } from '../types'
 
 const ColorLegend = observer(function ({
   model,

plugins/variants/src/shared/LegendBar.tsx

@@ -3,7 +3,7 @@ import { observer } from 'mobx-react'
 
 import ColorLegend from './ColorLegend'
 
-import type { Source } from '../util'
+import type { Source } from '../types'
 
 interface ReducedModel {
   scrollTop: number

plugins/variants/src/shared/RowPalettizer.tsx

@@ -1,7 +1,8 @@
 import { set1 } from '@jbrowse/core/ui/colors'
 import { Button } from '@mui/material'
 
-import { type Source, randomColor } from '../util'
+import { randomColor } from '../util'
+import { Source } from '../types'
 
 export default function RowPalettizer({
   setCurrLayout,

plugins/variants/src/shared/SetColorDialog.tsx

@@ -6,9 +6,9 @@ import { Button, DialogActions, DialogContent } from '@mui/material'
 import { makeStyles } from 'tss-react/mui'
 
 import SourcesGrid from './SourcesGrid'
-import { type Source } from '../util'
 import BulkEditPanel from './BulkEditPanel'
 import RowPalettizer from './RowPalettizer'
+import { Source } from '../types'
 
 const useStyles = makeStyles()({
   content: {

plugins/variants/src/shared/SourcesGrid.tsx

@@ -14,7 +14,7 @@ import { makeStyles } from 'tss-react/mui'
 // locals
 import { moveDown, moveUp } from './util'
 
-import type { Source } from '../util'
+import type { Source } from '../types'
 import type { GridColDef } from '@mui/x-data-grid'
 
 // icons

plugins/variants/src/shared/Tooltip.tsx

@@ -6,7 +6,7 @@ import { observer } from 'mobx-react'
 import Tooltip from '../Tooltip'
 
 import type { TooltipContentsComponent } from '../Tooltip'
-import type { Source } from '../util'
+import type { Source } from '../types'
 import type { Feature } from '@jbrowse/core/util'
 
 const en = (n: number) => n.toLocaleString('en-US')