Update autogen docs

website/docs/models/AssemblyManager.md

@@ -29,7 +29,7 @@ session.assemblies, session.sessionAssemblies, and session.temporaryAssemblies
 
 ```js
 // type signature
-IArrayType<IModelType<{ configuration: IMaybe<IReferenceType<IAnyType>>; }, { error: unknown; loadingP: Promise<void> | undefined; volatileRegions: BasicRegion[] | undefined; refNameAliases: RefNameAliases | undefined; lowerCaseRefNameAliases: RefNameAliases | undefined; cytobands: Feature[] | undefined; } & ... 5 m...
+IArrayType<IModelType<{ configuration: IMaybe<IReferenceType<IAnyType>>; }, { error: unknown; loadingP: Promise<void>; volatileRegions: BasicRegion[]; refNameAliases: RefNameAliases; lowerCaseRefNameAliases: RefNameAliases; cytobands: Feature[]; } & ... 5 more ... & { ...; }, _NotCustomized, _NotCustomized>>
 // code
 assemblies: types.array(assemblyFactory(conf, pm))
 ```
@@ -40,7 +40,7 @@ assemblies: types.array(assemblyFactory(conf, pm))
 
 ```js
 // type
-Record<string, { configuration: any; } & NonEmptyObject & { error: unknown; loadingP: Promise<void> | undefined; volatileRegions: BasicRegion[] | undefined; refNameAliases: RefNameAliases | undefined; lowerCaseRefNameAliases: RefNameAliases | undefined; cytobands: Feature[] | undefined; } & ... 6 more ... & IStateTr...
+Record<string, { configuration: any; } & NonEmptyObject & { error: unknown; loadingP: Promise<void>; volatileRegions: BasicRegion[]; refNameAliases: RefNameAliases; lowerCaseRefNameAliases: RefNameAliases; cytobands: Feature[]; } & ... 6 more ... & IStateTreeNode<...>>
 ```
 
 #### getter: assemblyNamesList
@@ -66,7 +66,7 @@ session.temporaryAssemblies
 
 ```js
 // type signature
-get: (asmName: string) => { configuration: any; } & NonEmptyObject & { error: unknown; loadingP: Promise<void> | undefined; volatileRegions: BasicRegion[] | undefined; refNameAliases: RefNameAliases | undefined; lowerCaseRefNameAliases: RefNameAliases | undefined; cytobands: Feature[] | undefined; } & ... 6 more ... & IS...
+get: (asmName: string) => { configuration: any; } & NonEmptyObject & { error: unknown; loadingP: Promise<void>; volatileRegions: BasicRegion[]; refNameAliases: RefNameAliases; lowerCaseRefNameAliases: RefNameAliases; cytobands: Feature[]; } & ... 6 more ... & IStateTreeNode<...>
 ```
 
 #### method: waitForAssembly
@@ -76,7 +76,7 @@ with regions loaded
 
 ```js
 // type signature
-waitForAssembly: (assemblyName: string) => Promise<{ configuration: any; } & NonEmptyObject & { error: unknown; loadingP: Promise<void> | undefined; volatileRegions: BasicRegion[] | undefined; refNameAliases: RefNameAliases | undefined; lowerCaseRefNameAliases: RefNameAliases | undefined; cytobands: Feature[] | undefined; } & ... 6 ...
+waitForAssembly: (assemblyName: string) => Promise<{ configuration: any; } & NonEmptyObject & { error: unknown; loadingP: Promise<void>; volatileRegions: BasicRegion[]; refNameAliases: RefNameAliases; lowerCaseRefNameAliases: RefNameAliases; cytobands: Feature[]; } & ... 6 more ... & IStateTreeNode<...>>
 ```
 
 #### method: getRefNameMapForAdapter
@@ -110,7 +110,7 @@ directly
 
 ```js
 // type signature
-removeAssembly: (asm: { configuration: any; } & NonEmptyObject & { error: unknown; loadingP: Promise<void> | undefined; volatileRegions: BasicRegion[] | undefined; refNameAliases: RefNameAliases | undefined; lowerCaseRefNameAliases: RefNameAliases | undefined; cytobands: Feature[] | undefined; } & ... 6 more ... & IStateTreeNode<.....
+removeAssembly: (asm: { configuration: any; } & NonEmptyObject & { error: unknown; loadingP: Promise<void>; volatileRegions: BasicRegion[]; refNameAliases: RefNameAliases; lowerCaseRefNameAliases: RefNameAliases; cytobands: Feature[]; } & ... 6 more ... & IStateTreeNode<...>) => void
 ```
 
 #### action: addAssembly

website/docs/models/BaseChordDisplay.md

@@ -117,7 +117,7 @@ renderStarted: () => void
 
 ```js
 // type signature
-renderSuccess: ({ message, data, reactElement, html, renderingComponent, }: { message?: string; data?: any; html?: string; reactElement?: React.ReactElement; renderingComponent?: React.ComponentType<any>; }) => void
+renderSuccess: ({ message, data, reactElement, html, renderingComponent, }: { message?: string; data?: any; html?: string; reactElement?: ReactElement<unknown, string | JSXElementConstructor<any>>; renderingComponent?: React.ComponentType<any>; }) => void
 ```
 
 #### action: renderError

website/docs/models/BaseDisplay.md

@@ -55,7 +55,7 @@ rpcDriverName: types.maybe(types.string)
 
 ```js
 // type
-React.FC<{ model: { id: string; type: string; rpcDriverName: string; } & NonEmptyObject & { rendererTypeName: string; error: unknown; message: string | undefined; } & IStateTreeNode<IModelType<{ id: IOptionalIType<...>; type: ISimpleType<...>; rpcDriverName: IMaybe<...>; }, { ...; }, _NotCustomized, _NotCustomized>>...
+React.FC<{ model: { id: string; type: string; rpcDriverName: string; } & NonEmptyObject & { rendererTypeName: string; error: unknown; message: string; } & IStateTreeNode<IModelType<{ id: IOptionalIType<ISimpleType<string>, [...]>; type: ISimpleType<...>; rpcDriverName: IMaybe<...>; }, { ...; }, _NotCustomized, _NotC...
 ```
 
 #### getter: DisplayBlurb

website/docs/models/BaseFeatureWidget.md

@@ -125,7 +125,7 @@ maxDepth: types.maybe(types.number)
 
 ```js
 // type signature
-IOptionalIType<IModelType<{}, { showCoordinatesSetting: string; intronBp: number; upDownBp: number; upperCaseCDS: boolean; charactersPerRow: number; feature: SimpleFeatureSerialized | undefined; mode: string; } & { ...; } & { ...; } & { ...; }, _NotCustomized, _NotCustomized>, [...]>
+IOptionalIType<IModelType<{}, { showCoordinatesSetting: string; intronBp: number; upDownBp: number; upperCaseCDS: boolean; charactersPerRow: number; feature: SimpleFeatureSerialized; mode: string; } & { ...; } & { ...; } & { ...; }, _NotCustomized, _NotCustomized>, [...]>
 // code
 sequenceFeatureDetails: types.optional(SequenceFeatureDetailsF(), {})
 ```

website/docs/models/BaseRootModel.md

@@ -60,7 +60,7 @@ sessionPath: types.optional(types.string, '')
 
 ```js
 // type signature
-IOptionalIType<IModelType<{ assemblies: IArrayType<IModelType<{ configuration: IMaybe<IReferenceType<IAnyType>>; }, { error: unknown; loadingP: Promise<void> | undefined; volatileRegions: BasicRegion[] | undefined; refNameAliases: RefNameAliases | undefined; lowerCaseRefNameAliases: RefNameAliases | undefined; cytob...
+IOptionalIType<IModelType<{ assemblies: IArrayType<IModelType<{ configuration: IMaybe<IReferenceType<IAnyType>>; }, { error: unknown; loadingP: Promise<void>; volatileRegions: BasicRegion[]; refNameAliases: RefNameAliases; lowerCaseRefNameAliases: RefNameAliases; cytobands: Feature[]; } & ... 5 more ... & { ...; }, ...
 // code
 assemblyManager: types.optional(
         assemblyManagerFactory(assemblyConfigSchema, pluginManager),

website/docs/models/BaseWebSession.md

@@ -125,7 +125,7 @@ TextSearchManager
 
 ```js
 // type
-{ assemblies: IMSTArray<IModelType<{ configuration: IMaybe<IReferenceType<IAnyType>>; }, { error: unknown; loadingP: Promise<void> | undefined; volatileRegions: BasicRegion[] | undefined; refNameAliases: RefNameAliases | undefined; lowerCaseRefNameAliases: RefNameAliases | undefined; cytobands: Feature[] | undefined...
+{ assemblies: IMSTArray<IModelType<{ configuration: IMaybe<IReferenceType<IAnyType>>; }, { error: unknown; loadingP: Promise<void>; volatileRegions: BasicRegion[]; refNameAliases: RefNameAliases; lowerCaseRefNameAliases: RefNameAliases; cytobands: Feature[]; } & ... 5 more ... & { ...; }, _NotCustomized, _NotCustomi...
 ```
 
 #### getter: savedSessionMetadata

website/docs/models/DotplotDisplay.md

@@ -85,7 +85,7 @@ setMessage: (messageText: string) => void
 
 ```js
 // type signature
-setRendered: (args?: { data: any; reactElement: React.ReactElement; renderingComponent: React.Component; }) => void
+setRendered: (args?: { data: any; reactElement: ReactElement<unknown, string | JSXElementConstructor<any>>; renderingComponent: Component<{}, {}, any>; }) => void
 ```
 
 #### action: setError

website/docs/models/FacetedModel.md

@@ -88,7 +88,7 @@ panelWidth: types.optional(types.number, () =>
 
 ```js
 // type
-{ readonly id: string; readonly conf: { [x: string]: any; } & NonEmptyObject & { setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({ ...; } & ... 2 more ... & IStateTreeNode<...>); } & IStateTreeNode<...>; ... 4 more ...; readonly metadata: Record<string, unknown>; }[]
+{ readonly id: string; readonly conf: { [x: string]: any; } & NonEmptyObject & { setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({ ...; } & ... 2 more ... & IStateTreeNode<...>); } & IStateTreeNode<...>; ... 4 more ...; readonly metadata: Record<...>; }[]
 ```
 
 #### getter: filteredNonMetadataKeys
@@ -116,7 +116,7 @@ any[]
 
 ```js
 // type
-{ readonly id: string; readonly conf: { [x: string]: any; } & NonEmptyObject & { setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({ ...; } & ... 2 more ... & IStateTreeNode<...>); } & IStateTreeNode<...>; ... 4 more ...; readonly metadata: Record<string, unknown>; }[]
+{ readonly id: string; readonly conf: { [x: string]: any; } & NonEmptyObject & { setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({ ...; } & ... 2 more ... & IStateTreeNode<...>); } & IStateTreeNode<...>; ... 4 more ...; readonly metadata: Record<...>; }[]
 ```
 
 ### FacetedModel - Actions

website/docs/models/JBrowseDesktopSessionModel.md

@@ -70,7 +70,7 @@ any
 
 ```js
 // type
-{ undoIdx: number; targetPath: string; } & NonEmptyObject & { history: unknown[]; notTrackingUndo: boolean; } & { readonly canUndo: boolean; readonly canRedo: boolean; } & { ...; } & IStateTreeNode<...>
+{ undoIdx: number; targetPath: string; } & NonEmptyObject & { history: unknown[]; notTrackingUndo: boolean; } & { readonly canUndo: boolean; readonly canRedo: boolean; } & { stopTrackingUndo(): void; ... 5 more ...; redo(): void; } & IStateTreeNode<...>
 ```
 
 #### getter: menus
@@ -84,7 +84,7 @@ any
 
 ```js
 // type
-{ assemblies: IMSTArray<IModelType<{ configuration: IMaybe<IReferenceType<IAnyType>>; }, { error: unknown; loadingP: Promise<void> | undefined; volatileRegions: BasicRegion[] | undefined; refNameAliases: RefNameAliases | undefined; lowerCaseRefNameAliases: RefNameAliases | undefined; cytobands: Feature[] | undefined...
+{ assemblies: IMSTArray<IModelType<{ configuration: IMaybe<IReferenceType<IAnyType>>; }, { error: unknown; loadingP: Promise<void>; volatileRegions: BasicRegion[]; refNameAliases: RefNameAliases; lowerCaseRefNameAliases: RefNameAliases; cytobands: Feature[]; } & ... 5 more ... & { ...; }, _NotCustomized, _NotCustomi...
 ```
 
 ### JBrowseDesktopSessionModel - Methods

website/docs/models/JBrowseReactCircularGenomeViewRootModel.md

@@ -44,7 +44,7 @@ session: Session
 
 ```js
 // type signature
-IOptionalIType<IModelType<{ assemblies: IArrayType<IModelType<{ configuration: IMaybe<IReferenceType<IAnyType>>; }, { error: unknown; loadingP: Promise<void> | undefined; volatileRegions: BasicRegion[] | undefined; refNameAliases: RefNameAliases | undefined; lowerCaseRefNameAliases: RefNameAliases | undefined; cytob...
+IOptionalIType<IModelType<{ assemblies: IArrayType<IModelType<{ configuration: IMaybe<IReferenceType<IAnyType>>; }, { error: unknown; loadingP: Promise<void>; volatileRegions: BasicRegion[]; refNameAliases: RefNameAliases; lowerCaseRefNameAliases: RefNameAliases; cytobands: Feature[]; } & ... 5 more ... & { ...; }, ...
 // code
 assemblyManager: types.optional(assemblyManagerType, {})
 ```

website/docs/models/JBrowseReactLinearGenomeViewRootModel.md

@@ -44,7 +44,7 @@ session: Session
 
 ```js
 // type signature
-IOptionalIType<IModelType<{ assemblies: IArrayType<IModelType<{ configuration: IMaybe<IReferenceType<IAnyType>>; }, { error: unknown; loadingP: Promise<void> | undefined; volatileRegions: BasicRegion[] | undefined; refNameAliases: RefNameAliases | undefined; lowerCaseRefNameAliases: RefNameAliases | undefined; cytob...
+IOptionalIType<IModelType<{ assemblies: IArrayType<IModelType<{ configuration: IMaybe<IReferenceType<IAnyType>>; }, { error: unknown; loadingP: Promise<void>; volatileRegions: BasicRegion[]; refNameAliases: RefNameAliases; lowerCaseRefNameAliases: RefNameAliases; cytobands: Feature[]; } & ... 5 more ... & { ...; }, ...
 // code
 assemblyManager: types.optional(AssemblyManager, {})
 ```

website/docs/models/JBrowseReactLinearGenomeViewSessionModel.md

@@ -130,5 +130,5 @@ getTrackActionMenuItems: (config: any) => { label: string; onClick: () => void;
 
 ```js
 // type signature
-addView: (typeName: string, initialState?: {}) => { id: string; displayName: string; minimized: boolean; type: string; offsetPx: number; bpPerPx: number; displayedRegions: Region[] & IStateTreeNode<IOptionalIType<...>>; ... 11 more ...; showTrackOutlines: boolean; } & ... 18 more ... & IStateTreeNode<...>
+addView: (typeName: string, initialState?: {}) => { id: string; displayName: string; minimized: boolean; type: string; offsetPx: number; bpPerPx: number; displayedRegions: Region[] & IStateTreeNode<IOptionalIType<IType<...>, [...]>>; ... 11 more ...; showTrackOutlines: boolean; } & ... 18 more ... & IStateTreeNode<...>
 ```

website/docs/models/LinearGenomeView.md

@@ -930,7 +930,7 @@ is returned. Will pop up a search dialog if multiple results are returned
 
 ```js
 // type signature
-navToSearchString: ({ input, assembly, }: { input: string; assembly: { configuration: any; } & NonEmptyObject & { error: unknown; loadingP: Promise<void> | undefined; volatileRegions: BasicRegion[] | undefined; refNameAliases: RefNameAliases | undefined; lowerCaseRefNameAliases: RefNameAliases | undefined; cytobands: Feature[] | undef...
+navToSearchString: ({ input, assembly, }: { input: string; assembly: { configuration: any; } & NonEmptyObject & { error: unknown; loadingP: Promise<void>; volatileRegions: BasicRegion[]; refNameAliases: RefNameAliases; lowerCaseRefNameAliases: RefNameAliases; cytobands: Feature[]; } & ... 6 more ... & IStateTreeNode<...>; }) => Promis...
 ```
 
 #### action: navToLocations

website/docs/models/LinearReadArcsDisplay.md

@@ -153,7 +153,7 @@ renderProps: () => any
 
 ```js
 // type signature
-trackMenuItems: () => (MenuDivider | MenuSubHeader | NormalMenuItem | CheckboxMenuItem | RadioMenuItem | SubMenuItem | { ...; } | { ...; })[]
+trackMenuItems: () => (MenuDivider | MenuSubHeader | NormalMenuItem | CheckboxMenuItem | RadioMenuItem | SubMenuItem | { ...; } | { ...; } | { ...; } | { ...; })[]
 ```
 
 #### method: renderSvg

website/docs/models/LinearReadCloudDisplay.md

@@ -95,7 +95,7 @@ any
 
 ```js
 // type signature
-trackMenuItems: () => (MenuDivider | MenuSubHeader | NormalMenuItem | CheckboxMenuItem | RadioMenuItem | SubMenuItem | { ...; })[]
+trackMenuItems: () => (MenuDivider | MenuSubHeader | NormalMenuItem | CheckboxMenuItem | RadioMenuItem | SubMenuItem | { ...; } | { ...; } | { ...; })[]
 ```
 
 #### method: renderSvg

website/docs/models/LinearSyntenyView.md

@@ -62,14 +62,14 @@ overwhelming
 
 ```js
 // type signature
-headerMenuItems: () => (MenuDivider | MenuSubHeader | NormalMenuItem | CheckboxMenuItem | RadioMenuItem | SubMenuItem | { ...; } | { ...; } | { ...; })[]
+headerMenuItems: () => (MenuDivider | MenuSubHeader | NormalMenuItem | CheckboxMenuItem | RadioMenuItem | SubMenuItem | { ...; } | { ...; } | { ...; } | { ...; })[]
 ```
 
 #### method: menuItems
 
 ```js
 // type signature
-menuItems: () => MenuItem[]
+menuItems: () => (MenuDivider | MenuSubHeader | NormalMenuItem | CheckboxMenuItem | RadioMenuItem | SubMenuItem | { ...; })[]
 ```
 
 ### LinearSyntenyView - Actions

website/docs/models/SharedLinearPileupDisplayMixin.md

@@ -98,6 +98,15 @@ IOptionalIType<IArrayType<ISimpleType<string>>, [undefined]>
 jexlFilters: types.optional(types.array(types.string), [])
 ```
 
+#### property: hideIndelsSetting
+
+```js
+// type signature
+IMaybe<ISimpleType<boolean>>
+// code
+hideIndelsSetting: types.maybe(types.boolean)
+```
+
 ### SharedLinearPileupDisplayMixin - Getters
 
 #### getter: colorBy
@@ -197,7 +206,7 @@ colorSchemeSubMenuItems: () => { label: string; onClick: () => void; }[]
 
 ```js
 // type signature
-trackMenuItems: () => MenuItem[]
+trackMenuItems: () => (MenuDivider | MenuSubHeader | NormalMenuItem | CheckboxMenuItem | RadioMenuItem | SubMenuItem | { ...; })[]
 ```
 
 ### SharedLinearPileupDisplayMixin - Actions