Skip to content

Commit

Permalink
[skip] Pass with no tests
Browse files Browse the repository at this point in the history
Revert "[update docs] v2.14.0"

This reverts commit b5020e8.

Revert "Prepare for v2.14.0 release"

This reverts commit c01172c.
  • Loading branch information
cmdcolin committed Aug 28, 2024
1 parent b5020e8 commit 446f532
Show file tree
Hide file tree
Showing 49 changed files with 234 additions and 394 deletions.
65 changes: 0 additions & 65 deletions CHANGELOG.md
Original file line number Diff line number Diff line change
@@ -1,68 +1,3 @@
yarn run v1.22.22 $ lerna-changelog --silent --silent --next-version 2.14.0

## 2.14.0 (2024-08-28)

#### :rocket: Enhancement

- `core`
- [#4532](https://github.com/GMOD/jbrowse-components/pull/4532) De-duplicate
snackbar messages ([@cmdcolin](https://github.com/cmdcolin))
- [#4516](https://github.com/GMOD/jbrowse-components/pull/4516) Add NCBI
sequence_report.tsv alias adapter, with ability to recode NCBI fasta files
to use UCSC style names ([@cmdcolin](https://github.com/cmdcolin))
- Other
- [#4533](https://github.com/GMOD/jbrowse-components/pull/4533) Allow setting
sequenceType='pep' in ReferenceSequenceTrack configuration
([@cmdcolin](https://github.com/cmdcolin))
- [#4531](https://github.com/GMOD/jbrowse-components/pull/4531) Add
UnindexedFastaAdapter for fetching small plaintext FASTA files
([@cmdcolin](https://github.com/cmdcolin))
- [#4528](https://github.com/GMOD/jbrowse-components/pull/4528) Add
description config slot to reference sequence track
([@cmdcolin](https://github.com/cmdcolin))
- `app-core`, `core`
- [#4523](https://github.com/GMOD/jbrowse-components/pull/4523) Allow
plaintext GTF and VCF files greater than 512Mb
([@cmdcolin](https://github.com/cmdcolin))
- `core`, `product-core`
- [#4519](https://github.com/GMOD/jbrowse-components/pull/4519) Add "Group by"
method for alignments tracks ([@cmdcolin](https://github.com/cmdcolin))

#### :bug: Bug Fix

- [#4535](https://github.com/GMOD/jbrowse-components/pull/4535) Fix crash after
navToLocString in some cases ([@cmdcolin](https://github.com/cmdcolin))

#### :house: Internal

- Other
- [#4530](https://github.com/GMOD/jbrowse-components/pull/4530) Consolidate
gff3 adapter featureData routine, avoid Number-ifying null phase
([@cmdcolin](https://github.com/cmdcolin))
- `core`
- [#4518](https://github.com/GMOD/jbrowse-components/pull/4518) Don't send
displayModel to "rendering" components on server side
([@cmdcolin](https://github.com/cmdcolin))
- `__mocks__`, `app-core`, `core`, `embedded-core`, `product-core`,
`text-indexing`, `web-core`
- [#4513](https://github.com/GMOD/jbrowse-components/pull/4513) Add new eslint
rules (no-unnecessary-condition, no-unused-expressions, etc) and tsconfig
noUncheckedIndexedAccess ([@cmdcolin](https://github.com/cmdcolin))
- `app-core`, `core`, `embedded-core`, `product-core`, `text-indexing`,
`web-core`
- [#4510](https://github.com/GMOD/jbrowse-components/pull/4510) Add biome lint
fixes ([@cmdcolin](https://github.com/cmdcolin))
- `core`, `product-core`, `text-indexing`
- [#4508](https://github.com/GMOD/jbrowse-components/pull/4508) Use
@mui/x-charts-vendor for d3 upgrade
([@cmdcolin](https://github.com/cmdcolin))

#### Committers: 2

- Colin Diesh ([@cmdcolin](https://github.com/cmdcolin))
- Garrett Stevens ([@garrettjstevens](https://github.com/garrettjstevens)) Done
in 1.27s.

yarn run v1.22.22 $ lerna-changelog --silent --silent --next-version 2.13.1

## 2.13.1 (2024-07-31)
Expand Down
2 changes: 1 addition & 1 deletion lerna.json
Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
{
"version": "2.14.0",
"version": "2.13.1",
"npmClient": "yarn",
"$schema": "node_modules/lerna/schemas/lerna-schema.json"
}
6 changes: 3 additions & 3 deletions packages/app-core/package.json
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
{
"name": "@jbrowse/app-core",
"version": "2.14.0",
"version": "2.13.1",
"description": "JBrowse 2 code shared between the 'full featured' apps e.g. jbrowse-web and jbrowse-desktop",
"keywords": [
"jbrowse",
Expand Down Expand Up @@ -32,7 +32,7 @@
"build:esm": "tsc --build tsconfig.build.esm.json",
"build:commonjs": "tsc --build tsconfig.build.commonjs.json",
"build": "npm run build:esm && npm run build:commonjs",
"test": "cd ../..; jest packages/app-core",
"test": "cd ../..; jest --passWithNoTests packages/app-core",
"clean": "rimraf dist esm *.tsbuildinfo",
"prebuild": "yarn clean",
"prepack": "yarn build && yarn useDist",
Expand All @@ -42,7 +42,7 @@
},
"dependencies": {
"@babel/runtime": "^7.16.3",
"@jbrowse/product-core": "^2.14.0",
"@jbrowse/product-core": "^2.13.1",
"@mui/icons-material": "^5.0.0",
"@mui/material": "^5.10.17",
"copy-to-clipboard": "^3.3.1",
Expand Down
4 changes: 2 additions & 2 deletions packages/core/package.json
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
{
"name": "@jbrowse/core",
"version": "2.14.0",
"version": "2.13.1",
"description": "JBrowse 2 core libraries used by plugins",
"keywords": [
"jbrowse",
Expand All @@ -20,7 +20,7 @@
"author": "JBrowse Team",
"main": "index.js",
"scripts": {
"test": "cd ../..; jest packages/core",
"test": "cd ../..; jest --passWithNoTests packages/core",
"storybook": "storybook dev --port 6006",
"storybook:build": "storybook build",
"coverage": "yarn test --coverage",
Expand Down
8 changes: 4 additions & 4 deletions packages/embedded-core/package.json
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
{
"name": "@jbrowse/embedded-core",
"version": "2.14.0",
"version": "2.13.1",
"description": "JBrowse 2 code shared between embedded products",
"keywords": [
"jbrowse",
Expand Down Expand Up @@ -32,7 +32,7 @@
"build:esm": "tsc --build tsconfig.build.esm.json",
"build:commonjs": "tsc --build tsconfig.build.commonjs.json",
"build": "npm run build:esm && npm run build:commonjs",
"test": "cd ../..; jest packages/embedded-core",
"test": "cd ../..; jest --passWithNoTests packages/embedded-core",
"clean": "rimraf dist esm *.tsbuildinfo",
"prebuild": "yarn clean",
"prepack": "yarn build && yarn useDist",
Expand All @@ -42,8 +42,8 @@
},
"dependencies": {
"@babel/runtime": "^7.16.3",
"@jbrowse/core": "^2.14.0",
"@jbrowse/product-core": "^2.14.0",
"@jbrowse/product-core": "^2.13.1",
"@jbrowse/core": "^2.13.1",
"@mui/icons-material": "^5.0.0",
"@mui/material": "^5.10.17",
"copy-to-clipboard": "^3.3.1",
Expand Down
6 changes: 3 additions & 3 deletions packages/product-core/package.json
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
{
"name": "@jbrowse/product-core",
"version": "2.14.0",
"version": "2.13.1",
"sideEffects": false,
"description": "JBrowse 2 code shared between products but not used by plugins",
"keywords": [
Expand Down Expand Up @@ -33,7 +33,7 @@
"build:esm": "tsc --build tsconfig.build.esm.json",
"build:commonjs": "tsc --build tsconfig.build.commonjs.json",
"build": "npm run build:esm && npm run build:commonjs",
"test": "cd ../..; jest packages/product-core",
"test": "cd ../..; jest --passWithNoTests packages/product-core",
"clean": "rimraf dist esm *.tsbuildinfo",
"prebuild": "yarn clean",
"prepack": "yarn build && yarn useDist",
Expand All @@ -43,7 +43,7 @@
},
"dependencies": {
"@babel/runtime": "^7.16.3",
"@jbrowse/core": "^2.14.0",
"@jbrowse/core": "^2.13.1",
"@mui/icons-material": "^5.0.0",
"@mui/material": "^5.10.17",
"copy-to-clipboard": "^3.3.1",
Expand Down
6 changes: 3 additions & 3 deletions packages/text-indexing/package.json
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
{
"name": "@jbrowse/text-indexing",
"version": "2.14.0",
"version": "2.13.1",
"description": "JBrowse 2 text indexing for desktop",
"keywords": [
"jbrowse",
Expand Down Expand Up @@ -32,7 +32,7 @@
"build:esm": "tsc --build tsconfig.build.esm.json",
"build:commonjs": "tsc --build tsconfig.build.commonjs.json",
"build": "npm run build:esm && npm run build:commonjs",
"test": "cd ../..; jest packages/text-indexing",
"test": "cd ../..; jest --passWithNoTests packages/text-indexing",
"clean": "rimraf dist esm *.tsbuildinfo",
"prebuild": "yarn clean",
"prepack": "yarn build && yarn useDist",
Expand All @@ -42,7 +42,7 @@
},
"dependencies": {
"@babel/runtime": "^7.16.3",
"@jbrowse/core": "^2.14.0",
"@jbrowse/core": "^2.0.0",
"ixixx": "^2.0.1",
"node-fetch": "^2.6.0",
"sanitize-filename": "^1.6.3"
Expand Down
8 changes: 4 additions & 4 deletions packages/web-core/package.json
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
{
"name": "@jbrowse/web-core",
"version": "2.14.0",
"version": "2.13.1",
"description": "JBrowse 2 code shared between web-app type products",
"keywords": [
"jbrowse",
Expand Down Expand Up @@ -32,7 +32,7 @@
"build:esm": "tsc --build tsconfig.build.esm.json",
"build:commonjs": "tsc --build tsconfig.build.commonjs.json",
"build": "npm run build:esm && npm run build:commonjs",
"test": "cd ../..; jest packages/web-core",
"test": "cd ../..; jest --passWithNoTests packages/web-core",
"clean": "rimraf dist esm *.tsbuildinfo",
"prebuild": "yarn clean",
"prepack": "yarn build && yarn useDist",
Expand All @@ -42,8 +42,8 @@
},
"dependencies": {
"@babel/runtime": "^7.16.3",
"@jbrowse/app-core": "^2.14.0",
"@jbrowse/product-core": "^2.14.0",
"@jbrowse/app-core": "^2.13.1",
"@jbrowse/product-core": "^2.13.1",
"@mui/icons-material": "^5.0.0",
"@mui/material": "^5.10.17",
"clone": "^2.0.0",
Expand Down
4 changes: 2 additions & 2 deletions plugins/alignments/package.json
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
{
"name": "@jbrowse/plugin-alignments",
"version": "2.14.0",
"version": "2.13.1",
"description": "JBrowse 2 alignments adapters, tracks, etc.",
"keywords": [
"jbrowse",
Expand All @@ -24,7 +24,7 @@
],
"scripts": {
"build": "npm-run-all build:*",
"test": "cd ../..; jest plugins/alignments",
"test": "cd ../..; jest --passWithNoTests plugins/alignments",
"prepublishOnly": "yarn test",
"prepack": "yarn build && yarn useDist",
"postpack": "yarn useSrc",
Expand Down
4 changes: 2 additions & 2 deletions plugins/arc/package.json
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
{
"name": "@jbrowse/plugin-arc",
"version": "2.14.0",
"version": "2.13.1",
"description": "JBrowse 2 arc adapters, tracks, etc.",
"keywords": [
"jbrowse",
Expand All @@ -24,7 +24,7 @@
],
"scripts": {
"build": "npm-run-all build:*",
"test": "cd ../..; jest plugins/arc",
"test": "cd ../..; jest --passWithNoTests plugins/arc",
"prepublishOnly": "yarn test",
"prepack": "yarn build && yarn useDist",
"postpack": "yarn useSrc",
Expand Down
4 changes: 2 additions & 2 deletions plugins/authentication/package.json
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
{
"name": "@jbrowse/plugin-authentication",
"version": "2.14.0",
"version": "2.13.1",
"description": "JBrowse 2 Authentication",
"keywords": [
"jbrowse",
Expand All @@ -24,7 +24,7 @@
],
"scripts": {
"build": "npm-run-all build:*",
"test": "cd ../..; jest plugins/authentication",
"test": "cd ../..; jest --passWithNoTests plugins/authentication",
"prepublishOnly": "yarn test",
"prepack": "yarn build && yarn useDist",
"postpack": "yarn useSrc",
Expand Down
4 changes: 2 additions & 2 deletions plugins/bed/package.json
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
{
"name": "@jbrowse/plugin-bed",
"version": "2.14.0",
"version": "2.13.1",
"description": "JBrowse 2 bed adapters, tracks, etc.",
"keywords": [
"jbrowse",
Expand All @@ -24,7 +24,7 @@
],
"scripts": {
"build": "npm-run-all build:*",
"test": "cd ../..; jest plugins/bed",
"test": "cd ../..; jest --passWithNoTests plugins/bed",
"prepublishOnly": "yarn test",
"prepack": "yarn build && yarn useDist",
"postpack": "yarn useSrc",
Expand Down
4 changes: 2 additions & 2 deletions plugins/breakpoint-split-view/package.json
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
{
"name": "@jbrowse/plugin-breakpoint-split-view",
"version": "2.14.0",
"version": "2.13.1",
"description": "JBrowse 2 breakpoint detail split view",
"keywords": [
"jbrowse",
Expand All @@ -24,7 +24,7 @@
],
"scripts": {
"build": "npm-run-all build:*",
"test": "cd ../..; jest plugins/breakpoint-split-view",
"test": "cd ../..; jest --passWithNoTests plugins/breakpoint-split-view",
"prepublishOnly": "yarn test",
"prepack": "yarn build && yarn useDist",
"postpack": "yarn useSrc",
Expand Down
4 changes: 2 additions & 2 deletions plugins/circular-view/package.json
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
{
"name": "@jbrowse/plugin-circular-view",
"version": "2.14.0",
"version": "2.13.1",
"description": "JBrowse 2 circular view",
"keywords": [
"jbrowse",
Expand All @@ -24,7 +24,7 @@
],
"scripts": {
"build": "npm-run-all build:*",
"test": "cd ../..; jest plugins/circular-view",
"test": "cd ../..; jest --passWithNoTests plugins/circular-view",
"prepublishOnly": "yarn test",
"prepack": "yarn build && yarn useDist",
"postpack": "yarn useSrc",
Expand Down
4 changes: 2 additions & 2 deletions plugins/comparative-adapters/package.json
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
{
"name": "@jbrowse/plugin-comparative-adapters",
"version": "2.14.0",
"version": "2.13.1",
"description": "JBrowse 2 comparative adapters",
"keywords": [
"jbrowse",
Expand All @@ -24,7 +24,7 @@
],
"scripts": {
"build": "npm-run-all build:*",
"test": "cd ../..; jest plugins/comparative-adapters",
"test": "cd ../..; jest --passWithNoTests plugins/comparative-adapters",
"prepublishOnly": "yarn test",
"prepack": "yarn build && yarn useDist",
"postpack": "yarn useSrc",
Expand Down
4 changes: 2 additions & 2 deletions plugins/config/package.json
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
{
"name": "@jbrowse/plugin-config",
"version": "2.14.0",
"version": "2.13.1",
"description": "JBrowse 2 config utilities",
"keywords": [
"jbrowse",
Expand All @@ -24,7 +24,7 @@
],
"scripts": {
"build": "npm-run-all build:*",
"test": "cd ../..; jest plugins/config",
"test": "cd ../..; jest --passWithNoTests plugins/config",
"prepublishOnly": "yarn test",
"prepack": "yarn build && yarn useDist",
"postpack": "yarn useSrc",
Expand Down
4 changes: 2 additions & 2 deletions plugins/data-management/package.json
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
{
"name": "@jbrowse/plugin-data-management",
"version": "2.14.0",
"version": "2.13.1",
"description": "JBrowse 2 linear genome view",
"keywords": [
"jbrowse",
Expand All @@ -24,7 +24,7 @@
],
"scripts": {
"build": "npm-run-all build:*",
"test": "cd ../..; jest plugins/data-management",
"test": "cd ../..; jest --passWithNoTests plugins/data-management",
"prepublishOnly": "yarn test",
"prepack": "yarn build && yarn useDist",
"postpack": "yarn useSrc",
Expand Down
4 changes: 2 additions & 2 deletions plugins/dotplot-view/package.json
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
{
"name": "@jbrowse/plugin-dotplot-view",
"version": "2.14.0",
"version": "2.13.1",
"description": "JBrowse 2 dotplot view",
"keywords": [
"jbrowse",
Expand All @@ -24,7 +24,7 @@
],
"scripts": {
"build": "npm-run-all build:*",
"test": "cd ../..; jest plugins/dotplot-view",
"test": "cd ../..; jest --passWithNoTests plugins/dotplot-view",
"prepublishOnly": "yarn test",
"prepack": "yarn build && yarn useDist",
"postpack": "yarn useSrc",
Expand Down
Loading

0 comments on commit 446f532

Please sign in to comment.