Updates

GMOD · Nov 21, 2024 · 2caeb78 · 2caeb78
1 parent 6340ef3
commit 2caeb78
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Showing 5 changed files with 6 additions and 6 deletions.
diff --git a/plugins/alignments/src/LinearPileupDisplay/SharedLinearPileupDisplayMixin.ts b/plugins/alignments/src/LinearPileupDisplay/SharedLinearPileupDisplayMixin.ts
@@ -680,6 +680,7 @@ export function SharedLinearPileupDisplayMixin(
       },
     }))
     .preProcessSnapshot(snap => {
+      // eslint-disable-next-line @typescript-eslint/no-unnecessary-condition
       if (snap) {
         // @ts-expect-error
         const { colorBy, filterBy, ...rest } = snap

diff --git a/plugins/alignments/src/LinearPileupDisplay/components/GroupByDialog.tsx b/plugins/alignments/src/LinearPileupDisplay/components/GroupByDialog.tsx
@@ -23,7 +23,6 @@ import { LinearGenomeViewModel } from '@jbrowse/plugin-linear-genome-view'
 
 // locals
 import { getUniqueTags } from '../../shared/getUniqueTags'
-import { LinearAlignmentsDisplayModel } from '../../LinearAlignmentsDisplay/model'
 import { defaultFilterFlags } from '../../shared/util'
 
 function clone(c: unknown) {
@@ -78,7 +77,9 @@ const GroupByTagDialog = observer(function (props: {
         <TextField
           fullWidth
           value={type}
-          onChange={event => setType(event.target.value)}
+          onChange={event => {
+            setType(event.target.value)
+          }}
           label="Group by..."
           select
         >

diff --git a/plugins/alignments/src/LinearReadArcsDisplay/configSchema.ts b/plugins/alignments/src/LinearReadArcsDisplay/configSchema.ts
@@ -1,7 +1,6 @@
 import PluginManager from '@jbrowse/core/PluginManager'
 import { ConfigurationSchema } from '@jbrowse/core/configuration'
 import { linearBasicDisplayConfigSchemaFactory } from '@jbrowse/plugin-linear-genome-view'
-import { types } from 'mobx-state-tree'
 import { defaultFilterFlags } from '../shared/util'
 
 /**

diff --git a/plugins/alignments/src/LinearReadCloudDisplay/model.ts b/plugins/alignments/src/LinearReadCloudDisplay/model.ts
@@ -19,7 +19,6 @@ import FilterListIcon from '@mui/icons-material/ClearAll'
 // locals
 import { ColorBy, FilterBy } from '../shared/types'
 import { ChainData } from '../shared/fetchChains'
-import { defaultFilterFlags } from '../shared/util'
 
 // async
 const FilterByTagDialog = lazy(

diff --git a/test_data/volvox/config.json b/test_data/volvox/config.json
@@ -330,7 +330,7 @@
     {
       "type": "AlignmentsTrack",
       "trackId": "volvox_cram_pileup",
-      "name": "volvox-sorted.cram (contigA, LinearPileupDisplay, large height)",
+      "name": "volvox-sorted.cram (contigA, LinearPileupDisplay, large height, colorBy mappingQual)",
       "category": ["Integration test"],
       "metadata": {
         "description": "this is a metadata description",
@@ -490,7 +490,7 @@
     {
       "type": "AlignmentsTrack",
       "trackId": "volvox_alignments",
-      "name": "volvox-sorted.bam (ctgA, larger default height)",
+      "name": "volvox-sorted.bam (ctgA, larger default height, colorBy mappingQual)",
       "category": ["Integration test"],
       "assemblyNames": ["volvox", "volvox2"],
       "adapter": {