Add option to switch between plotting backends

src/gemdat/_plot_backend.py

@@ -0,0 +1,44 @@
+from __future__ import annotations
+
+from types import ModuleType
+
+from gemdat import plots as plots_default
+from gemdat.plots import matplotlib as plots_matplotlib
+from gemdat.plots import plotly as plots_plotly
+
+
+def plot_backend(func):
+    """Decorator to switch plotting backend."""
+
+    def wrap(*args, backend: str | None = None, **kwargs):
+        module: ModuleType
+
+        if backend is None:
+            module = plots_default
+        elif backend in ('mpl', 'matplotlib'):
+            module = plots_matplotlib
+        elif backend == 'plotly':
+            module = plots_plotly
+        else:
+            raise ValueError(f'No such backend: {backend}')
+
+        result = func(*args, module=module, **kwargs)
+
+        return result
+
+    wrap.__doc__ = func.__doc__
+    wrap.__doc__ += """
+
+Parameters
+---------
+backend : str
+    Choose plotting backend. Options: matplotlib, mpl, plotly
+    Defaults to plotly unless the plot is only available in matplotlib.
+
+Returns
+-------
+fig : plotly.graph_objects.Figure or matplotlib.figure.Figure depending on backend.
+    Output figure
+"""
+
+    return wrap

src/gemdat/jumps.py

@@ -10,6 +10,7 @@
 from pymatgen.core.units import FloatWithUnit
 from scipy.constants import Boltzmann, angstrom, elementary_charge
 
+from ._plot_backend import plot_backend
 from .caching import weak_lru_cache
 from .collective import Collective
 from .simulation_metrics import SimulationMetrics
@@ -353,32 +354,27 @@ def rates(self, n_parts: int = 10) -> pd.DataFrame:
 
         return df
 
-    def plot_jumps_vs_distance(self, **kwargs):
+    @plot_backend
+    def plot_jumps_vs_distance(self, *, module, **kwargs):
         """See [gemdat.plots.jumps_vs_distance][] for more information."""
-        from gemdat import plots
+        return module.jumps_vs_distance(jumps=self, **kwargs)
 
-        return plots.jumps_vs_distance(jumps=self, **kwargs)
-
-    def plot_jumps_vs_time(self, **kwargs):
+    @plot_backend
+    def plot_jumps_vs_time(self, *, module, **kwargs):
         """See [gemdat.plots.jumps_vs_time][] for more information."""
-        from gemdat import plots
-
-        return plots.jumps_vs_time(jumps=self, **kwargs)
+        return module.jumps_vs_time(jumps=self, **kwargs)
 
-    def plot_collective_jumps(self, **kwargs):
+    @plot_backend
+    def plot_collective_jumps(self, *, module, **kwargs):
         """See [gemdat.plots.collective_jumps][] for more information."""
-        from gemdat import plots
-
-        return plots.collective_jumps(jumps=self, **kwargs)
+        return module.collective_jumps(jumps=self, **kwargs)
 
-    def plot_jumps_3d(self, **kwargs):
+    @plot_backend
+    def plot_jumps_3d(self, *, module, **kwargs):
         """See [gemdat.plots.jumps_3d][] for more information."""
-        from gemdat import plots
+        return module.jumps_3d(jumps=self, **kwargs)
 
-        return plots.jumps_3d(jumps=self, **kwargs)
-
-    def plot_jumps_3d_animation(self, **kwargs):
+    @plot_backend
+    def plot_jumps_3d_animation(self, *, module, **kwargs):
         """See [gemdat.plots.jumps_3d_animation][] for more information."""
-        from gemdat import plots
-
-        return plots.jumps_3d_animation(jumps=self, **kwargs)
+        return module.jumps_3d_animation(jumps=self, **kwargs)

src/gemdat/orientations.py

@@ -1,13 +1,18 @@
 from __future__ import annotations
 
 from dataclasses import InitVar, dataclass, field, replace
+from typing import TYPE_CHECKING
 
 import numpy as np
 from pymatgen.symmetry.groups import PointGroup
 
-from gemdat.trajectory import Trajectory
 from gemdat.utils import cartesian_to_spherical, fft_autocorrelation
 
+from ._plot_backend import plot_backend
+
+if TYPE_CHECKING:
+    from gemdat.trajectory import Trajectory
+
 
 @dataclass
 class Orientations:
@@ -259,23 +264,20 @@ def autocorrelation(self):
         """Compute the autocorrelation of the orientation vectors using FFT."""
         return fft_autocorrelation(self.vectors)
 
-    def plot_rectilinear(self, **kwargs):
+    @plot_backend
+    def plot_rectilinear(self, *, module, **kwargs):
         """See [gemdat.plots.rectilinear][] for more info."""
-        from gemdat import plots
-
-        return plots.rectilinear(orientations=self, **kwargs)
+        return module.rectilinear(orientations=self, **kwargs)
 
-    def plot_bond_length_distribution(self, **kwargs):
+    @plot_backend
+    def plot_bond_length_distribution(self, *, module, **kwargs):
         """See [gemdat.plots.bond_length_distribution][] for more info."""
-        from gemdat import plots
+        return module.bond_length_distribution(orientations=self, **kwargs)
 
-        return plots.bond_length_distribution(orientations=self, **kwargs)
-
-    def plot_autocorrelation(self, **kwargs):
+    @plot_backend
+    def plot_autocorrelation(self, *, module, **kwargs):
         """See [gemdat.plots.unit_vector_autocorrelation][] for more info."""
-        from gemdat import plots
-
-        return plots.autocorrelation(orientations=self, **kwargs)
+        return module.autocorrelation(orientations=self, **kwargs)
 
 
 def calculate_spherical_areas(shape: tuple[int, int], radius: float = 1) -> np.ndarray:

src/gemdat/path.py

@@ -15,6 +15,7 @@
 
 from gemdat.volume import FreeEnergyVolume
 
+from ._plot_backend import plot_backend
 from .utils import nearest_structure_reference
 
 if TYPE_CHECKING:
@@ -142,17 +143,15 @@ def stop_site(self) -> tuple[int, int, int]:
         """Return stop site."""
         return self.sites[-1]
 
-    def plot_energy_along_path(self, **kwargs):
+    @plot_backend
+    def plot_energy_along_path(self, module, **kwargs):
         """See [gemdat.plots.energy_along_path][] for more info."""
-        from gemdat import plots
+        return module.energy_along_path(path=self, **kwargs)
 
-        return plots.energy_along_path(path=self, **kwargs)
-
-    def plot_path_on_grid(self, **kwargs):
+    @plot_backend
+    def plot_path_on_grid(self, module, **kwargs):
         """See [gemdat.plots.path_on_grid][] for more info."""
-        from gemdat import plots
-
-        return plots.path_on_grid(path=self, **kwargs)
+        return module.path_on_grid(path=self, **kwargs)
 
 
 def free_energy_graph(

src/gemdat/plots/matplotlib/_autocorrelation.py

@@ -1,9 +1,12 @@
 from __future__ import annotations
 
+from typing import TYPE_CHECKING
+
 import matplotlib.pyplot as plt
 import numpy as np
 
-from gemdat.orientations import Orientations
+if TYPE_CHECKING:
+    from gemdat.orientations import Orientations
 
 
 def autocorrelation(

src/gemdat/plots/matplotlib/_bond_length_distribution.py

@@ -1,11 +1,14 @@
 from __future__ import annotations
 
-import matplotlib.pyplot as plt
+from typing import TYPE_CHECKING
 
-from gemdat.orientations import Orientations
+import matplotlib.pyplot as plt
 
 from .._shared import _fit_skewnorm_to_hist, _orientations_to_histogram
 
+if TYPE_CHECKING:
+    from gemdat.orientations import Orientations
+
 
 def bond_length_distribution(*, orientations: Orientations, bins: int = 50) -> plt.Figure:
     """Plot the bond length probability distribution.

src/gemdat/plots/matplotlib/_displacement_histogram.py

@@ -1,8 +1,11 @@
 from __future__ import annotations
 
+from typing import TYPE_CHECKING
+
 import matplotlib.pyplot as plt
 
-from gemdat.trajectory import Trajectory
+if TYPE_CHECKING:
+    from gemdat.trajectory import Trajectory
 
 
 def displacement_histogram(trajectory: Trajectory) -> plt.Figure:

src/gemdat/plots/matplotlib/_displacement_per_atom.py

@@ -1,8 +1,11 @@
 from __future__ import annotations
 
+from typing import TYPE_CHECKING
+
 import matplotlib.pyplot as plt
 
-from gemdat.trajectory import Trajectory
+if TYPE_CHECKING:
+    from gemdat.trajectory import Trajectory
 
 
 def displacement_per_atom(*, trajectory: Trajectory) -> plt.Figure:

src/gemdat/plots/matplotlib/_displacement_per_element.py

@@ -1,9 +1,13 @@
 from __future__ import annotations
 
+from typing import TYPE_CHECKING
+
 import matplotlib.pyplot as plt
 
 from gemdat.plots._shared import _mean_displacements_per_element
-from gemdat.trajectory import Trajectory
+
+if TYPE_CHECKING:
+    from gemdat.trajectory import Trajectory
 
 
 def displacement_per_element(*, trajectory: Trajectory) -> plt.Figure:

src/gemdat/plots/matplotlib/_energy_along_path.py

@@ -1,9 +1,12 @@
 from __future__ import annotations
 
+from typing import TYPE_CHECKING
+
 import matplotlib.pyplot as plt
 from pymatgen.core import Structure
 
-from gemdat.path import Pathway
+if TYPE_CHECKING:
+    from gemdat.path import Pathway
 
 
 def energy_along_path(

src/gemdat/plots/matplotlib/_frequency_vs_occurence.py

@@ -1,10 +1,14 @@
 from __future__ import annotations
 
+from typing import TYPE_CHECKING
+
 import matplotlib.pyplot as plt
 import numpy as np
 
 from gemdat.simulation_metrics import SimulationMetrics
-from gemdat.trajectory import Trajectory
+
+if TYPE_CHECKING:
+    from gemdat.trajectory import Trajectory
 
 
 def frequency_vs_occurence(*, trajectory: Trajectory) -> plt.Figure:

src/gemdat/plots/matplotlib/_msd_per_element.py

@@ -1,9 +1,12 @@
 from __future__ import annotations
 
+from typing import TYPE_CHECKING
+
 import matplotlib.pyplot as plt
 import numpy as np
 
-from gemdat.trajectory import Trajectory
+if TYPE_CHECKING:
+    from gemdat.trajectory import Trajectory
 
 
 def msd_per_element(

src/gemdat/plots/matplotlib/_rectilinear.py

@@ -1,12 +1,12 @@
 from __future__ import annotations
 
+from typing import TYPE_CHECKING
+
 import matplotlib.pyplot as plt
 import numpy as np
 
-from gemdat.orientations import (
-    Orientations,
-    calculate_spherical_areas,
-)
+if TYPE_CHECKING:
+    from gemdat.orientations import Orientations
 
 
 def rectilinear(
@@ -32,6 +32,8 @@ def rectilinear(
     fig : matplotlib.figure.Figure
         Output figure
     """
+    from gemdat.orientations import calculate_spherical_areas
+
     az, el, _ = orientations.vectors_spherical.T
     az = az.flatten()
     el = el.flatten()

src/gemdat/plots/matplotlib/_vibrational_amplitudes.py

@@ -1,11 +1,15 @@
 from __future__ import annotations
 
+from typing import TYPE_CHECKING
+
 import matplotlib.pyplot as plt
 import numpy as np
 from scipy import stats
 
 from gemdat.simulation_metrics import SimulationMetrics
-from gemdat.trajectory import Trajectory
+
+if TYPE_CHECKING:
+    from gemdat.trajectory import Trajectory
 
 
 def vibrational_amplitudes(*, trajectory: Trajectory) -> plt.Figure:

src/gemdat/plots/plotly/_autocorrelation.py

@@ -1,9 +1,12 @@
 from __future__ import annotations
 
+from typing import TYPE_CHECKING
+
 import numpy as np
 import plotly.graph_objects as go
 
-from gemdat.orientations import Orientations
+if TYPE_CHECKING:
+    from gemdat.orientations import Orientations
 
 
 def autocorrelation(

src/gemdat/plots/plotly/_bond_length_distribution.py

@@ -1,12 +1,15 @@
 from __future__ import annotations
 
+from typing import TYPE_CHECKING
+
 import plotly.express as px
 import plotly.graph_objects as go
 
-from gemdat.orientations import Orientations
-
 from .._shared import _fit_skewnorm_to_hist, _orientations_to_histogram
 
+if TYPE_CHECKING:
+    from gemdat.orientations import Orientations
+
 
 def bond_length_distribution(*, orientations: Orientations, bins: int = 50) -> go.Figure:
     """Plot the bond length probability distribution.

src/gemdat/plots/plotly/_displacement_histogram.py

@@ -1,11 +1,14 @@
 from __future__ import annotations
 
+from typing import TYPE_CHECKING
+
 import numpy as np
 import pandas as pd
 import plotly.express as px
 import plotly.graph_objects as go
 
-from gemdat.trajectory import Trajectory
+if TYPE_CHECKING:
+    from gemdat.trajectory import Trajectory
 
 
 def _trajectory_to_dataframe(trajectory: Trajectory) -> pd.DataFrame: