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Develop kb #72

Merged
merged 124 commits into from
Aug 25, 2023
Merged

Develop kb #72

merged 124 commits into from
Aug 25, 2023

Commits on Apr 28, 2021

  1. change datatype of several columns for hdf to int

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Commits on Sep 28, 2021

  1. add option to merge led arrays

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  2. Avoid skipping num_ref_images at the beginning to prevent averaging r… 

    …eference intensities from images during the experiment
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Commits on Sep 30, 2021

  1. Add option for averaging properties of images by summarizing n images… 

    … each
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    kriboe90 committed Sep 30, 2021
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  2. bugfixes

    @kriboe90
    kriboe90 committed Sep 30, 2021
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  3. figing image number bug

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    kriboe90 committed Sep 30, 2021
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  4. adding temporary workarounds for merging led arrays

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Commits on Oct 5, 2021

  1. add led array merge option to config file

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  2. add option to manually change weighting factor for for extinction coe… 

    …fficients preference and curvarture in cost function
    @kriboe90
    kriboe90 committed Oct 5, 2021
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  3. bugfixes

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    kriboe90 committed Oct 5, 2021
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  4. bugfixes + adding option for changing number of iterations

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    kriboe90 committed Oct 5, 2021
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  5. automatically calculate number of led arrays

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    kriboe90 committed Oct 5, 2021
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Commits on Jul 4, 2022

  1. Merge branch 'add_multi_image_averaging' into develop_kb 

    # Conflicts:
#	ledsa/analysis/ExtinctionCoefficients.py
#	ledsa/analysis/ExtinctionCoefficientsNumeric.py
#	ledsa/core/_led_helper_functions.py
#	ledsa/core/file_handling.py
#	ledsa/core/led_helper.py
#	ledsa/data_extraction/DataExtractor.py
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  2. add missing imports

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    kriboe90 committed Jul 4, 2022
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Commits on Jul 5, 2022

  1. Merge branch 'master' into develop_kb

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  2. resolve merge conflicts and add missing dependencies

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    kriboe90 committed Jul 5, 2022
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Commits on Nov 24, 2022

  1. Add Config for data analysis

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  2. Change reading of experiment data from config_analysis.ini

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    kriboe90 committed Nov 24, 2022
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  3. Add Config for data analysis

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    kriboe90 committed Nov 24, 2022
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  4. Change reading of experiment data from config_analysis.ini

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  5. Merge remote-tracking branch 'origin/develop_kb_add_config' into deve… 

    …lop_kb_add_config
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Commits on Nov 28, 2022

  1. change parser argument for reading analysis config

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  2. add init config load statements

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    kriboe90 committed Nov 28, 2022
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  3. add check for availability of computed data from s1 - s3

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  4. move reference_property from parser to config file

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  5. minor changes in config

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  6. automatically activate multicore processing if num_of_cores larger 1

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Commits on Dec 5, 2022

  1. add ConfigDataAnalysis and exceptions for reading configk files

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  2. refactoring

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  3. outsourcing image reading functions

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    kriboe90 committed Dec 5, 2022
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Commits on Dec 6, 2022

  1. edit config entries

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    kriboe90 committed Dec 6, 2022
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  2. edit config entries

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    kriboe90 committed Dec 6, 2022
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  3. outsourcing image reading functions

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    kriboe90 committed Dec 6, 2022
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  4. outsourcing image reading functions

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    kriboe90 committed Dec 6, 2022
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  5. add checks for input parameter

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    kriboe90 committed Dec 6, 2022
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  6. refactoring and bugfixes

    @kriboe90
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  7. Merge branch 'develop_kb_add_config' into develop_kb 

    # Conflicts:
#	ledsa/core/ConfigData.py
#	ledsa/core/file_handling.py
#	ledsa/data_extraction/DataExtractor.py
#	ledsa/data_extraction/step_3_functions.py
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  8. refactoring and bugfixes

    @kriboe90
    kriboe90 committed Dec 6, 2022
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  9. refactoring and bugfixes

    @kriboe90
    kriboe90 committed Dec 6, 2022
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Commits on Dec 14, 2022

  1. refactoring and bugfixes

    @kriboe90
    kriboe90 committed Dec 14, 2022
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  2. add Acceptance Tests for computation of extinction coefficients

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    kriboe90 committed Dec 14, 2022
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Commits on Mar 22, 2023

  1. edit tests

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    kriboe90 committed Mar 22, 2023
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Commits on Aug 8, 2023

  1. print output of minimize function instead of internal display argumen… 

    …t in order to prevent robot framework to raise error
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Commits on Aug 9, 2023

  1. add check for computed extinction coefficient results against input data

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  2. edits in tests configuration

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    kriboe90 committed Aug 9, 2023
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  3. set tempdir as workdir

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    kriboe90 committed Aug 9, 2023
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  4. add local yml file for testing

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    kriboe90 committed Aug 9, 2023
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Commits on Aug 10, 2023

  1. make adjustmenst for newer versions of pandas and scipy

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  2. add requirements.txt

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  3. refactoring on tests

    @kriboe90
    kriboe90 committed Aug 10, 2023
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  4. update s3 according to updated scipy version

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    kriboe90 committed Aug 10, 2023
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  5. edit robot framework yaml file

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    kriboe90 committed Aug 10, 2023
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  6. edit robot framework yaml file

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    kriboe90 committed Aug 10, 2023
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  7. edit gitignore

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    kriboe90 committed Aug 10, 2023
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  8. fixing typos

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    kriboe90 committed Aug 10, 2023
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  9. resolving bugfixes, warnings and typos

    @kriboe90
    kriboe90 committed Aug 10, 2023
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  10. remove unit tests

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    kriboe90 committed Aug 10, 2023
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  11. remove multi camera

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    kriboe90 committed Aug 10, 2023
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  12. remove GUI

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  13. remove testtools

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Commits on Aug 11, 2023

  1. refactoring and defining path by os.path.join()

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  2. bugfixing

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Commits on Aug 17, 2023

  1. adding docstrings and typehints

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  2. adding docstrings and typehints

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  3. adding docstrings and typehints

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  4. adding docstrings and typehints

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  5. adding docstrings and typehints

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  6. adding docstrings and typehints

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Commits on Aug 18, 2023

  1. adding docstrings and typehints

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  2. adding docstrings and typehints

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  3. adding docstrings and typehints

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  4. adding docstrings and typehints

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  5. adding docstrings and typehints and delete unused code

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  6. adding docstrings and typehints and delete unused code

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  7. adding docstrings

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  8. adding docstrings

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Commits on Aug 20, 2023

  1. adding docstrings and typehints

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  2. adding docstrings and typehints

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  3. adding docstrings and typehints

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Commits on Aug 21, 2023

  1. adding docstrings

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  2. adding docstrings

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Commits on Aug 22, 2023

  1. adding docstrings and typehints

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  2. adding docstrings

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  3. adding docstrings and typehints

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  4. adding docstrings

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  5. removing dead code

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  6. adding docstrings

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  7. adding docstrings

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  8. adding docstrings and typehints

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  9. make adjustements according to changed structure of config file

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  10. edit Sphinx Config

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  11. edit makefile for sphinx

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  12. edit sphinx requirements

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  13. add functions for demo download and setup

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Commits on Aug 23, 2023

  1. move demo module inside ledsa module, edit dem_run, make function to … 

    …edit config files
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  2. removing unnecessary code

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  3. bugfixes and resolving TODOs

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  4. editing download function, adding docstrings

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  5. move tests inside ledsa nodule

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Commits on Aug 24, 2023

  1. refactoring and moving led_positions calculation

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  2. refactoring demo functions

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  3. refactoring parser arguments

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  4. refactoring and aditing documentation

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  5. refactoring and editing documentation

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  6. outsource parser_arguments_declaration.py arguments and run functions… 

    … in separate files and merge __main__.py files
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  7. outsource parser_arguments_declaration.py arguments and run functions… 

    … in separate files and merge __main__.py files
    @kriboe90
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  8. edit documentation

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  9. remove unused files

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  10. update requirements.txt

    @kriboe90
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  11. move parser files to core

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    kriboe90 committed Aug 24, 2023
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  12. edit tests

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    kriboe90 committed Aug 24, 2023
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  13. remove ledpositions main function

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    kriboe90 committed Aug 24, 2023
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  14. remove todos

    @kriboe90
    kriboe90 committed Aug 24, 2023
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  15. edit test working dir

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    kriboe90 committed Aug 24, 2023
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  16. cleanup

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    kriboe90 committed Aug 24, 2023
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  17. edit setup.cfg and LICENSE.md

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    kriboe90 committed Aug 24, 2023
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Commits on Aug 25, 2023

  1. update requirements.txt

    @kriboe90
    kriboe90 committed Aug 25, 2023
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  2. adjust test directory in github workflow file

    @kriboe90
    kriboe90 committed Aug 25, 2023
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  3. update_gitignore

    @kriboe90
    kriboe90 committed Aug 25, 2023
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  4. remove files

    @kriboe90
    kriboe90 committed Aug 25, 2023
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  5. fixing typo in tests path

    @kriboe90
    kriboe90 committed Aug 25, 2023
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  6. remove temp workflow file

    @kriboe90
    kriboe90 committed Aug 25, 2023
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  7. edit README.md

    @kriboe90
    kriboe90 committed Aug 25, 2023
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  8. edit run_robot_framework_tests.yml

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    kriboe90 committed Aug 25, 2023
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