edit package doc

.Rbuildignore

@@ -7,3 +7,4 @@
 ^\.github$
 ^_pkgdown\.yaml$
 ^rbibtools\.Rproj$
+^CONTRIBUTING\.md$

.github/ISSUE_TEMPLATE/bug_report.md

@@ -0,0 +1,28 @@
+---
+name: Bug report
+about: Standard bug report template
+title: ''
+labels: 'bug'
+---
+
+**Bug description**
+
+A clear and concise description of what the bug is.
+
+
+**Reproducible example**
+
+It is easier for developers to help if they can reproduce the problem.   
+Could you please provide a minimal reproducible example?
+
+
+**Additional context**
+
+Add any other context about the problem here.
+
+
+<details>
+```r
+# Output of sessionInfo()
+```
+</details>

.github/ISSUE_TEMPLATE/feature_request.md

@@ -0,0 +1,10 @@
+---
+name: Feature request
+about: Standard feature request template
+title: ''
+labels: 'enhancement'
+---
+
+**Feature description**
+
+A clear and complete description of what the requested feature is.

.github/ISSUE_TEMPLATE/other_issue.md

@@ -0,0 +1,6 @@
+---
+name: Other issue
+about: Template for other issue types
+title: ''
+labels: ''
+---

CONTRIBUTING.md

@@ -0,0 +1,271 @@
+# Contributing to rbibtools
+
+First off, thanks for taking the time to contribute to `rbibtools`!
+
+All types of contributions are encouraged and valued. See the 
+[Table of contents](#table-of-contents) for different ways to help and details 
+about how this project handles them. Please make sure to read the relevant 
+section before making your contribution. It will make it a lot easier for us 
+maintainers and smooth out the experience for all involved.
+
+
+
+## Table of contents
+
+- [Code of conduct](#code-of-conduct)
+- [Style guide](#style-guide)
+- [Commit messages](#commit-messages)
+- [Asking questions](#asking-questions)
+- [Reporting bugs](#reporting-bugs)
+- [Requesting features](#requesting-features)
+- [Contributing code](#contributing-code)
+
+
+
+## Code of conduct
+
+This project is released with a
+[Contributor Code of Conduct](https://github.com/frbcesab/rbibtools/blob/main/CODE_OF_CONDUCT.md).
+By participating, you are expected to uphold this code. Please report 
+unacceptable behavior to <rdev.nc@gmail.com>.
+
+
+
+## Style guide
+
+We use the [Tidyverse style guide](https://style.tidyverse.org/) for writing R 
+code. Functions are documented with the 
+[roxygen2](https://roxygen2.r-lib.org/articles/roxygen2.html) syntax. 
+`rbibtools` uses the `lower_snake_case`.
+
+
+
+## Commit messages
+
+If you want to contribute by commiting changes, please try to use the 
+[Conventional commits](https://www.conventionalcommits.org/en/v1.0.0/) 
+specification.
+
+
+
+## Asking questions
+
+Before you ask a question, it is best to search for existing
+[Issues](https://github.com/frbcesab/rbibtools/issues) that might help 
+you. In case you have found a suitable issue and still need clarification, you 
+can write your question in this issue.
+
+If you then still feel the need to ask a question and need clarification, we 
+recommend the following:
+
+- Open a new [Issue](https://github.com/frbcesab/rbibtools/issues/new).
+- Use the template [other_issue.md](https://github.com/frbcesab/rbibtools/blob/main/.github/ISSUE_TEMPLATE/other_issue.md).
+- Provide as much context as you can about what you're running into.
+- Provide project and platform versions (paste the output of `sessionInfo()`).
+
+We will then take care of the issue as soon as possible.
+
+
+
+## Reporting bugs
+
+
+
+### Before submitting a bug report
+
+A good bug report shouldn't leave others needing to chase you up for more 
+information. Therefore, we ask you to investigate carefully, collect information
+and describe the issue in detail in your report. Please complete the following 
+steps in advance to help us fix any potential bug as fast as possible.
+
+- Make sure that you are using the latest version of `rbibtools`.
+- Determine if your bug is really a bug and not an error on your side.
+- To see if other users have experienced (and potentially already solved) the 
+same issue you are having, check if there is not already a bug report existing 
+for your bug or error in the [bug tracker](https://github.com/frbcesab/rbibtools/issues?q=label%3Abug).
+
+
+
+### How do I submit a bug report?
+
+We use [GitHub Issues](https://github.com/frbcesab/rbibtools/issues) to 
+track bugs and errors. If you run into an issue with the project:
+
+- Open a new [Issue](https://github.com/frbcesab/rbibtools/issues/new).
+- Use the template [bug_report.md](https://github.com/frbcesab/rbibtools/blob/main/.github/ISSUE_TEMPLATE/bug_report.md).
+- Explain the behavior you would expect and the actual behavior.
+- Please provide as much context as possible and describe the 
+*reproduction steps* that someone else can follow to recreate the issue on 
+their own. This usually includes your code with a reproducible example.
+
+We will then take care of the issue as soon as possible.
+
+
+
+## Requesting features
+
+
+
+### Before requesting a feature
+
+- Make sure that you are using the latest version of `rbibtools`.
+- Read the [documentation](https://github.com/frbcesab/rbibtools/)
+carefully and find out if the functionality is already covered.
+- Perform a [search](https://github.com/frbcesab/rbibtools/issues) to 
+see if this enhancement has already been suggested. If it has, add a comment to 
+the existing issue instead of opening a new one.
+
+
+
+### How do I submit a feature request?
+
+Feature requests are tracked as 
+[GitHub Issues](https://github.com/frbcesab/rbibtools/issues).
+
+- Open a new [Issue](https://github.com/frbcesab/rbibtools/issues/new).
+- Use the template [feature_request.md](https://github.com/frbcesab/rbibtools/blob/main/.github/ISSUE_TEMPLATE/feature_request.md).
+- Provide a clear and descriptive title for the issue to identify the suggestion.
+- Provide a step-by-step description of the suggested enhancement in as 
+many details as possible.
+- Explain why this enhancement would be useful to most `rbibtools` users.
+
+We will then take care of the issue as soon as possible.
+
+
+
+## Contributing code
+
+
+
+### General workflow
+
+We use the [GitHub flow](https://docs.github.com/en/get-started/quickstart/github-flow) 
+to collaborate on this project:
+
+
+1. [Fork](https://docs.github.com/en/get-started/quickstart/contributing-to-projects) 
+this repository using the GitHub interface.
+1. [Clone](https://docs.github.com/en/repositories/creating-and-managing-repositories/cloning-a-repository) 
+your fork using `git clone fork-url` (replace `fork-url` by the URL of your fork). 
+Alternatively, open RStudio IDE and create a New Project from Version Control.
+1. Create a new branch w/ `git checkout -b branch-name` (replace `branch-name` 
+by the name of your new branch).
+1. Make your contribution (see below for examples).
+1. Stage (`git add`) and commit (`git commit`) your changes as often as necessary
+1. Push your changes to GitHub w/ `git push origin branch-name`.
+3. Submit a [Pull Request](https://docs.github.com/en/get-started/quickstart/contributing-to-projects#making-a-pull-request) on the [original repo](https://github.com/frbcesab/rbibtools/compare).
+
+We will then review the PR as soon as possible.
+
+
+
+### Improve documentation
+
+
+
+#### Editing the README
+
+If you want to contribute by improving the README, please edit the `README.Rmd` 
+(not the `README.md`). Do not forget to update the `README.md` by running: 
+
+```r
+rmarkdown::render("README.Rmd")
+```
+
+
+
+#### Editing vignettes
+
+If you want to contribute by editing an existing vignette, just edit the 
+corresponding `Rmd` file stored in the `vignettes/` folder.
+
+If you want to contribute by adding a new vignette, create a new `Rmd` file in 
+the `vignettes/` folder and add the following header:
+
+```yaml
+---
+title: "Vignette Title"
+output: rmarkdown::html_vignette
+vignette: >
+  %\VignetteIndexEntry{Vignette Title}
+  %\VignetteEngine{knitr::rmarkdown}
+  %\VignetteEncoding{UTF-8}
+---
+```
+
+If you use a new external dependency, do not forget to add it in the `DESCRIPTION` 
+file under the section `Suggests` (only if this package is not already listed 
+under the section `Imports`).
+
+Check the integrity of the package with: 
+
+```r
+devtools::check()
+```
+
+
+
+#### Editing function documentation
+
+If you want to contribute by improving the documentation of a function, open 
+the corresponding file in the `R/` folder and edit lines starting with `#'` 
+([roxygen2](https://roxygen2.r-lib.org/articles/roxygen2.html) syntax).
+
+Update the documentation (`Rd` files in the `man/` folder) by running:
+
+```r
+devtools::document()
+```
+
+If you use a new external dependency in the example section, do not forget to 
+add it in the `DESCRIPTION` file under the section `Imports` (only if this 
+package is not already listed).
+
+Check the integrity of the package with: 
+
+```r
+devtools::check()
+```
+
+
+
+### Fix bug
+
+If you want to contribute by improving the code of a function, open and edit 
+the corresponding file in the `R/` folder.
+
+Check the integrity of the package with: 
+
+```r
+devtools::check()
+```
+
+Do not forget to adapt the 
+[unit tests](https://r-pkgs.org/testing-basics.html#introducing-testthat) for 
+the function by editing the corresponding file stored in the `tests/testthat/` 
+folder. We use the package [`testthat`](https://testthat.r-lib.org/) to 
+implement unit tests.
+
+Check your tests by running:
+
+```r
+devtools::test()
+```
+
+
+
+### New feature
+
+If you want to contribute by submitting a new feature, please follow this 
+workflow:
+
+1. Create a new `R` file in the folder `R/`.
+2. Implement the code of the function.
+3. Document your function w/ the [roxygen2](https://roxygen2.r-lib.org/articles/roxygen2.html) syntax.
+4. If necessary, add additional dependencies in the `DESCRIPTION` file.
+5. Update the package documentation w/ `devtools::document()`.
+6. Create a new `R` file in the folder `tests/testthat/`.
+7. Implement [unit tests](https://r-pkgs.org/testing-basics.html#introducing-testthat) for the new function.
+8. Check the integrity of the package w/ `devtools::check()`.
+
+**Thanks for your contribution!**

DESCRIPTION

@@ -1,12 +1,12 @@
 Package: rbibtools
 Type: Package
-Title: Toolbox to Handle bib Files
+Title: Toolbox to Handle BibTeX Files
 Version: 0.0.1
 Authors@R: c(
     person(given   = "Nicolas",
            family  = "Casajus",
            role    = c("aut", "cre", "cph"),
-           email   = "nicolas.casajus@fondationbiodiversite.fr",
+           email   = "rdev.nc@gmail.com",
            comment = c(ORCID = "0000-0002-5537-5294")))
 Description: Imports, cleans, and exports BibTeX references exported by 
     references management softwares (e.g. Mendeley, Zotero).
@@ -16,12 +16,11 @@ License: GPL (>= 2)
 Encoding: UTF-8
 LazyData: true
 Roxygen: list(markdown = TRUE)
-RoxygenNote: 7.2.1
+RoxygenNote: 7.3.2
 Imports: 
     bib2df,
     stringi
 Suggests: 
     knitr,
-    rmarkdown,
-    writexl
+    rmarkdown
 VignetteBuilder: knitr